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This means that you can use HUMID to remove duplicates as a\npre-processing step before starting your analysis. If your project was\nsequenced without UMIs, or if the UMIs are present in the headers of the FastQ\nreads (as is done by BCL Convert), you can use the following command:\n\n.. code-block:: bash\n\n    humid forward.fastq.gz reverse.fastq.gz\n\n\nIf the UMIs are located in a separate FastQ file use\n\n.. code-block:: bash\n\n    humid forward.fastq.gz reverse.fastq.gz umi.fast.gz\n\n\nFor other use cases, we recommend that you use `fastp\n\u003chttps://github.com/OpenGene/fastp#unique-molecular-identifier-umi-processing\u003e`_\nto move the UMIs to the header of the forward FastQ file before deduplicating\nthem with HUMID.\n\nPlease see the `usage \u003chttps://humid.readthedocs.io/en/latest/usage.html\u003e`_\nsection of the documentation for more details.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fjfjlaros%2Fhumid","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fjfjlaros%2Fhumid","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fjfjlaros%2Fhumid/lists"}