{"id":15359640,"url":"https://github.com/jhsmit/hdxms-datasets","last_synced_at":"2025-04-15T07:22:51.015Z","repository":{"id":65044628,"uuid":"557348018","full_name":"Jhsmit/hdxms-datasets","owner":"Jhsmit","description":"Download and parse curated HDX-MS datasets","archived":false,"fork":false,"pushed_at":"2025-01-21T09:56:28.000Z","size":1208,"stargazers_count":2,"open_issues_count":2,"forks_count":0,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-03-28T17:48:05.376Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://jhsmit.github.io/hdxms-datasets/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Jhsmit.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.rst","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":"AUTHORS.rst","dei":null,"publiccode":null,"codemeta":null}},"created_at":"2022-10-25T14:23:20.000Z","updated_at":"2025-01-21T09:55:47.000Z","dependencies_parsed_at":"2024-01-11T21:43:30.063Z","dependency_job_id":"b54e1d5c-9e36-4be3-9ef7-6bdb9d545c97","html_url":"https://github.com/Jhsmit/hdxms-datasets","commit_stats":{"total_commits":97,"total_committers":2,"mean_commits":48.5,"dds":"0.010309278350515427","last_synced_commit":"ed06b83b79338f1b917f197c52e5bff0fe40946b"},"previous_names":[],"tags_count":8,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Jhsmit%2Fhdxms-datasets","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Jhsmit%2Fhdxms-datasets/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Jhsmit%2Fhdxms-datasets/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Jhsmit%2Fhdxms-datasets/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Jhsmit","download_url":"https://codeload.github.com/Jhsmit/hdxms-datasets/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":248804804,"owners_count":21164134,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-10-01T12:45:30.072Z","updated_at":"2025-04-15T07:22:50.992Z","avatar_url":"https://github.com/Jhsmit.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# HDXMS Datasets\n\n\n* Free software: MIT license\n\n### Installation\n\n```bash\n$ pip install hdxms-datasets\n```\n\n### HDX-MS database\n\nCurrently a beta test database is set up at:\nhttps://github.com/Jhsmit/HDX-MS-datasets\n\n### Example code\n\n\n```python\nfrom pathlib import Path\nfrom hdxms_datasets import DataVault\n\n# local path the download datasets to\ncache_dir = Path('.cache')\n\n# create a vault with local cache dir, set `remote_url` to connect to a different database\nvault = DataVault(cache_dir=cache_dir)\n\n# Download a specific HDX dataset\nvault.fetch_dataset(\"20221007_1530_SecA_Krishnamurthy\")\n\n# Load the dataset\nds = vault.load_dataset(\"20221007_1530_SecA_Krishnamurthy\")\n\n# Load the FD control of the first 'state' in the dataset.\nfd_control = ds.load_peptides(0, \"FD_control\")\n\n# Load the corresponding experimental peptides.\npeptides = ds.load_peptides(0, \"experiment\")\n\n```\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fjhsmit%2Fhdxms-datasets","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fjhsmit%2Fhdxms-datasets","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fjhsmit%2Fhdxms-datasets/lists"}