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Notebook","funding_links":[],"categories":[],"sub_categories":[],"readme":"# PyHDX\n\n[![zenodo](https://zenodo.org/badge/206772076.svg)](https://zenodo.org/badge/latestdoi/206772076)\n[![biorxiv](https://img.shields.io/badge/bioRxiv-v2-%23be2635)](https://www.biorxiv.org/content/10.1101/2020.09.30.320887v2)\n[![license](https://img.shields.io/badge/License-MIT-yellow.svg)](https://opensource.org/licenses/MIT)\n[![docs](https://readthedocs.org/projects/pyhdx/badge/?version=latest)](https://pyhdx.readthedocs.io/en/latest/?badge=latest)\n\n\n\nPyHDX is python project which can be used to derive Gibbs free energy from HDX-MS data.\n\n[PyHDX web](http://pyhdx.jhsmit.org)\n\n[PyHDX latest documentation](https://pyhdx.readthedocs.io/en/latest/)\n\n[PyHDX on YouTube](https://www.youtube.com/channel/UCTro6Iv1BhvjUPYZNu5TJWg)\n\n[![screenshot](images/screenshot_pyhdx043.png)](http://pyhdx.jhsmit.org/)\n\n## Installation\n\nInstallation of the latest stable beta with `pip`:\n\n```bash\n$ pip install pyhdx\n```\n\nInstallation with web interface extra:\n\n```bash\n$ pip install pyhdx[web]\n```\n\nConda install (includes web interface extra):\n\n```bash\n$ conda install pyhdx\n```\n\n# Run PyHDX\n\nMost up-to-date code examples are in the directory `pyhdx/templates`\n\nTo run the web server:\n\n```bash\n$ pyhdx serve\n```\n    \nPlease refer to the [docs](https://pyhdx.readthedocs.io/en/stable/) for more details on how to run PyHDX.\n\n## Web Application\n\nThe PyHDX web application is currently hosted at:\nhttp://pyhdx.jhsmit.org\n\nA test file can be downloaded from [here](https://raw.githubusercontent.com/Jhsmit/PyHDX/master/tests/test_data/input/ecSecB_apo.csv) and [here](https://raw.githubusercontent.com/Jhsmit/PyHDX/master/tests/test_data/input/ecSecB_dimer.csv\u003e) (right click, save as).\n\nA beta version might be available at:\nhttp://pyhdx-beta.jhsmit.org\n\n\n## Publication\n\nOur Analytical Chemistry Publication describing PyHDX can be found [here](https://doi.org/10.1021/acs.analchem.1c02155)\n\nThe latest version (v2) of our biorxiv paper: https://doi.org/10.1101/2020.09.30.320887 \n\nPython code for analysis and generation the figures in the paper are here: https://github.com/Jhsmit/PyHDX-paper\n\n## Other\n\nHDX MS datasets repository and format:\nhttps://github.com/Jhsmit/HDX-MS-datasets\n\nHDXMS datasets python bindings:\nhttps://github.com/Jhsmit/hdxms-datasets\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fjhsmit%2Fpyhdx","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fjhsmit%2Fpyhdx","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fjhsmit%2Fpyhdx/lists"}