{"id":21992363,"url":"https://github.com/josttim/transnetyx-pyrat-utils","last_synced_at":"2025-03-23T03:31:42.544Z","repository":{"id":261265197,"uuid":"883784232","full_name":"JostTim/transnetyx-pyrat-utils","owner":"JostTim","description":null,"archived":false,"fork":false,"pushed_at":"2024-11-06T14:30:23.000Z","size":12,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-01-28T09:49:51.857Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/JostTim.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-11-05T15:08:42.000Z","updated_at":"2024-11-06T14:30:26.000Z","dependencies_parsed_at":"2024-11-05T16:42:25.014Z","dependency_job_id":"13df8237-8414-47ae-9f92-26299a669de0","html_url":"https://github.com/JostTim/transnetyx-pyrat-utils","commit_stats":null,"previous_names":["josttim/transnetyx-pyrat-utils"],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JostTim%2Ftransnetyx-pyrat-utils","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JostTim%2Ftransnetyx-pyrat-utils/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JostTim%2Ftransnetyx-pyrat-utils/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JostTim%2Ftransnetyx-pyrat-utils/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/JostTim","download_url":"https://codeload.github.com/JostTim/transnetyx-pyrat-utils/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":245052619,"owners_count":20553161,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-29T20:13:36.574Z","updated_at":"2025-03-23T03:31:42.503Z","avatar_url":"https://github.com/JostTim.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# transnetyx-pyrat-utils\n\nExport your transnetyx genotyping results as a .csv file.\n\n## Python\n\nJust supply the name of the file you have in your Downloads folder, and run ``.convert()``\n\n```python\nfrom transnetyx_pyrat_utils import Converter\nconverter = Converter(\"OrderResults-2215183-638663954144327998.csv\").convert()\n```\n\n## CLI \n\n```bash\npdm run transpyrat OrderResults-2215183-638663954144327998.csv\n```\n\nor \n\n```bash\npdm run transpyrat -f OrderResults-2215183-638663954144327998.csv\n```\n\nor \n\n```bash\npdm run transpyrat --file OrderResults-2215183-638663954144327998.csv\n```\n\nget the full help with\n\n```bash\npdm run transpyrat --help\n```\n⤵️\n```bash\nUsage: -c [-h] [-f FILE] [file]\n\nPositional Arguments:\n  file                  The file name or path leading to the file to be converted. By default, the file name is searched for    \n                        in the Downloads folder of the current user's home.\n\nOptions:\n  -h, --help            show this help message and exit\n  -f, --file FILE       The file name or path leading to the file to be converted. By default, the file name is searched for    \n                        in the Downloads folder of the current user's home.\n```\n\n## Config\n\nAs you have more lines and strains to convert from transnetyx framework intopyrat one, add these strains in the `transnetyx_config.json` configuration file, that sits in the source code folder of this package. (it can also be supplied from a different path, externally, by changing the transnetyx_config_filename or pyrat_config_filename attributes of your converter object, after instanciating it with a filename, and before running ``.convert()``)","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fjosttim%2Ftransnetyx-pyrat-utils","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fjosttim%2Ftransnetyx-pyrat-utils","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fjosttim%2Ftransnetyx-pyrat-utils/lists"}