{"id":22413807,"url":"https://github.com/jsta/dataflowchl","last_synced_at":"2026-02-05T10:02:00.059Z","repository":{"id":51026611,"uuid":"78973335","full_name":"jsta/dataflowchl","owner":"jsta","description":"Improved estimation of phytoplankton abundance and fine-scale water quality features via simultaneous discrete and semi-continuous surveys","archived":false,"fork":false,"pushed_at":"2022-08-01T17:52:53.000Z","size":37598,"stargazers_count":1,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"master","last_synced_at":"2025-07-03T13:53:12.708Z","etag":null,"topics":["estuaries","florida-bay","manuscript","research-compendium","water-quality"],"latest_commit_sha":null,"homepage":"","language":"TeX","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/jsta.png","metadata":{"files":{"readme":"README.Rmd","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2017-01-14T23:12:42.000Z","updated_at":"2023-12-28T17:06:34.000Z","dependencies_parsed_at":"2022-09-21T03:02:02.024Z","dependency_job_id":null,"html_url":"https://github.com/jsta/dataflowchl","commit_stats":null,"previous_names":[],"tags_count":3,"template":false,"template_full_name":null,"purl":"pkg:github/jsta/dataflowchl","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jsta%2Fdataflowchl","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jsta%2Fdataflowchl/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jsta%2Fdataflowchl/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jsta%2Fdataflowchl/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/jsta","download_url":"https://codeload.github.com/jsta/dataflowchl/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jsta%2Fdataflowchl/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":29119218,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-02-05T09:40:36.738Z","status":"ssl_error","status_checked_at":"2026-02-05T09:36:49.977Z","response_time":65,"last_error":"SSL_read: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["estuaries","florida-bay","manuscript","research-compendium","water-quality"],"created_at":"2024-12-05T14:14:38.245Z","updated_at":"2026-02-05T10:02:00.041Z","avatar_url":"https://github.com/jsta.png","language":"TeX","funding_links":[],"categories":[],"sub_categories":[],"readme":"---\ntitle: \"\"\noutput: github_document\n---\n\n```{r setup, include=FALSE}\nknitr::opts_chunk$set(echo = TRUE)\n```\n\n# Code for _Stachelek et al. (2017)_\n\n[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.839334.svg)](https://doi.org/10.5281/zenodo.839334)\n\n**Jemma Stachelek, Christopher J. Madden, Stephen Kelly, Michelle Blaha (submitted)**. Improved estimation of phytoplankton abundance and fine-scale water quality features via simultaneous discrete and semi-continuous surveys.\n\n## Dependencies\n### R packages\n\n```{r echo=FALSE}\nknitr::kable(data.frame(packages1 = c(\"DataflowR\", \"raster\", \"ggplot2\", \n                                     \"dplyr\", \"ggrepel\"), \n                        packages3 = c(\"ggsn\", \"maptools\", \"cowplot\",\n                                      \"viridis\", \"sp\"), \n                        packages2 = c(\"remake\", \"gdalUtils\", \"sf\", \n                                     \"fitdistrplus\", \"GGally\"), \n                        packages4 = c(\"knitr\", \"kableExtra\", \"magrittr\", \n                                      \"gstat\", \"ggjoy\")), \n             col.names = c(\"\", \"\", \"\", \"\"))\n```\n\n## Data\n\n**Christopher J. Madden, Jemma Stachelek, Stephen Kelly, Michelle Blaha (2017)** Florida Bay water quality estimated by underway flow-through measurement. _KNB Data Repository_. [http://dx.doi.org/10.5063/F11R6NGR](http://dx.doi.org/10.5063/F11R6NGR)\n\n## Build\n\nBuilding the figures, tables, and manuscript has been streamlined with [GNU make](http://kbroman.org/minimal_make/). See the items defined as build targets by running the following line in the terminal:\n\n`$ make help`\n\n```{bash echo=FALSE}\nmake help_no_color\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fjsta%2Fdataflowchl","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fjsta%2Fdataflowchl","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fjsta%2Fdataflowchl/lists"}