{"id":26359521,"url":"https://github.com/karchinlab/open-cravat-dxapp","last_synced_at":"2025-08-31T01:35:04.847Z","repository":{"id":142938139,"uuid":"613506461","full_name":"KarchinLab/open-cravat-dxapp","owner":"KarchinLab","description":"open-cravat-dxapp","archived":false,"fork":false,"pushed_at":"2024-05-06T17:55:48.000Z","size":187,"stargazers_count":1,"open_issues_count":1,"forks_count":0,"subscribers_count":4,"default_branch":"main","last_synced_at":"2025-03-16T15:59:56.914Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/KarchinLab.png","metadata":{"files":{"readme":"Readme.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null}},"created_at":"2023-03-13T17:49:31.000Z","updated_at":"2025-02-17T19:15:03.000Z","dependencies_parsed_at":"2023-06-29T20:02:40.075Z","dependency_job_id":null,"html_url":"https://github.com/KarchinLab/open-cravat-dxapp","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/KarchinLab/open-cravat-dxapp","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KarchinLab%2Fopen-cravat-dxapp","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KarchinLab%2Fopen-cravat-dxapp/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KarchinLab%2Fopen-cravat-dxapp/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KarchinLab%2Fopen-cravat-dxapp/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/KarchinLab","download_url":"https://codeload.github.com/KarchinLab/open-cravat-dxapp/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KarchinLab%2Fopen-cravat-dxapp/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":272930002,"owners_count":25017057,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-30T02:00:09.474Z","response_time":77,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-03-16T15:59:58.807Z","updated_at":"2025-08-31T01:35:04.812Z","avatar_url":"https://github.com/KarchinLab.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# OpenCRAVAT (DNAnexus Platform App)\n\nThis is the source code for an app that runs on the DNAnexus Platform.\n\n## Installing\n\nTo start, [install the `dx` command line tool](https://documentation.dnanexus.com/downloads#installing-the-python-sdk-and-command-line-tools).\n\nLog in with the [`dx login`](https://documentation.dnanexus.com/getting-started/cli-quickstart#step-1-log-in) command. Then switch to your project \n```\ndx select \u003cProjectName\u003e\n```\n\nNext, clone this repository and navigate to it.\n```\ngit clone https://github.com/KarchinLab/open-cravat-dxapp.git\ncd open-cravat-dxapp\n```\n\nUse [dx build](https://documentation.dnanexus.com/user/helpstrings-of-sdk-command-line-utilities#build) to build the applet.\n\n```\ndx build open-cravat\n```\n\nOn the DNAnexus platform GUI, the applet will appear at the top level of your project's files. \n\nTo update the applet, add the `--overwrite` or `-f` flag to `dx build`.\n\n```\ndx build --overwrite open-cravat\n```\n\n## Running\n\nTo run the applet in the GUI, simply find the applet in your project's files and click it.\n\nThe applet can also be run from a terminal using [`dx run`](https://documentation.dnanexus.com/user/helpstrings-of-sdk-command-line-utilities#run)\n\nFor documentation of the app, and a detailed explanation of parameters, see the main app readme at [`open-cravat/Readme.md`](./open-cravat/Readme.md)","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fkarchinlab%2Fopen-cravat-dxapp","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fkarchinlab%2Fopen-cravat-dxapp","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fkarchinlab%2Fopen-cravat-dxapp/lists"}