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# ( [![PyPI package](https://img.shields.io/pypi/v/wc_onto.svg)](https://pypi.python.org/pypi/wc_onto) )\n[![Documentation](https://readthedocs.org/projects/wc-onto/badge/?version=latest)](https://docs.karrlab.org/wc_onto)\n[![Test results](https://circleci.com/gh/KarrLab/wc_onto.svg?style=shield)](https://circleci.com/gh/KarrLab/wc_onto)\n[![Test coverage](https://coveralls.io/repos/github/KarrLab/wc_onto/badge.svg)](https://coveralls.io/github/KarrLab/wc_onto)\n[![Code analysis](https://api.codeclimate.com/v1/badges/e7b017f281d0905620de/maintainability)](https://codeclimate.com/github/KarrLab/wc_onto)\n[![License](https://img.shields.io/github/license/KarrLab/wc_onto.svg)](LICENSE)\n![Analytics](https://ga-beacon.appspot.com/UA-86759801-1/wc_onto/README.md?pixel)\n\n# WC-Onto\n\nOntology for whole-cell modeling\n\n## Installation\n\n### Installing the ontology for use in Python\n1. Install this Python package with pip\n    ```\n    pip install git+https://github.com/KarrLab/wc_onto.git#egg=wc_onto[all]\n    ```\n\n    This command will install this Python package, including the ontology (in OBO format) and the Python code for using the ontology. Once installed, the ontology will be located at ``pkg_resources.resource_filename('wc_onto', 'onto.obo')``.\n\n2. Obtain a [BioPortal API key](http://bioportal.bioontology.org/)\n3. Save your BioPortal API key to a configuration file (``~/.wc/wc_onto.cfg``)\n    ```\n    [wc_onto]\n        [[bioportal]]\n            key = \u003cBioPortal API key\u003e\n    ```    \n4. Import the package. The other ontologies which wc_onto references will automatically be downloaded the first time that the package is imported.\n    ```\n    from wc_onto import onto\n    ```\n\n### Downloading the ontology \nAlternatively, the ontology can be downloaded (in OBO format) from GitHub or BioPortal\n\n* Download [latest revision](https://raw.githubusercontent.com/KarrLab/wc_onto/master/wc_onto/onto.obo) from GitHub\n* Download [latest snapshot](https://bioportal.bioontology.org/ontologies/WC) from BioPortal\n\n## Documentation\nPlease see the [API documentation](https://docs.karrlab.org/wc_onto).\n\n## License\nThe package is released under the [MIT license](LICENSE).\n\n## Development team\nThis package was developed by the [Karr Lab](https://www.karrlab.org) at the Icahn School of Medicine at Mount Sinai in New York, USA.\n\n## Questions and comments\nPlease contact the [Karr Lab](https://www.karrlab.org) with any questions or comments.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fkarrlab%2Fwc_onto","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fkarrlab%2Fwc_onto","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fkarrlab%2Fwc_onto/lists"}