{"id":29016285,"url":"https://github.com/karrlab/wc_sandbox","last_synced_at":"2025-07-14T12:35:14.703Z","repository":{"id":62588350,"uuid":"133587580","full_name":"KarrLab/wc_sandbox","owner":"KarrLab","description":"A public jupyter notebook server for live documentation of karr lab packages","archived":false,"fork":false,"pushed_at":"2020-10-29T21:01:13.000Z","size":382,"stargazers_count":1,"open_issues_count":0,"forks_count":0,"subscribers_count":8,"default_branch":"master","last_synced_at":"2025-06-25T22:07:55.701Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/KarrLab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2018-05-16T00:22:04.000Z","updated_at":"2023-09-26T20:48:20.000Z","dependencies_parsed_at":"2022-11-03T17:51:57.794Z","dependency_job_id":null,"html_url":"https://github.com/KarrLab/wc_sandbox","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/KarrLab/wc_sandbox","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KarrLab%2Fwc_sandbox","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KarrLab%2Fwc_sandbox/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KarrLab%2Fwc_sandbox/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KarrLab%2Fwc_sandbox/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/KarrLab","download_url":"https://codeload.github.com/KarrLab/wc_sandbox/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KarrLab%2Fwc_sandbox/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":265292809,"owners_count":23742157,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-06-25T22:07:54.449Z","updated_at":"2025-07-14T12:35:14.642Z","avatar_url":"https://github.com/KarrLab.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"[![PyPI package](https://img.shields.io/pypi/v/wc_sandbox.svg)](https://pypi.python.org/pypi/wc_sandbox)\n[![Documentation](https://readthedocs.org/projects/wc_sandbox/badge/?version=latest)](https://docs.karrlab.org/wc_sandbox)\n[![Test results](https://circleci.com/gh/KarrLab/wc_sandbox.svg?style=shield)](https://circleci.com/gh/KarrLab/wc_sandbox)\n[![Test coverage](https://coveralls.io/repos/github/KarrLab/wc_sandbox/badge.svg)](https://coveralls.io/github/KarrLab/wc_sandbox)\n[![Code analysis](https://api.codeclimate.com/v1/badges/c8e5e44b6d9b957ef0ec/maintainability)](https://codeclimate.com/github/KarrLab/wc_sandbox)\n[![License](https://img.shields.io/github/license/KarrLab/wc_sandbox.svg)](LICENSE)\n![Analytics](https://ga-beacon.appspot.com/UA-86759801-1/wc_sandbox/README.md?pixel)\n\n\n# WC-Sandbox: Jupyter playground for whole-cell modeling\n\nWC-Sandbox is a collection of Jupyter notebooks for learning about whole-cell modeling. The sandbox is available at [https://sandbox.karrlab.org](https://sandbox.karrlab.org).\n\n## Installation\n1. Install dependencies\n\n    * [Pip](https://pip.pypa.io) \u003e= 18.0\n    * [Python](https://www.python.org) \u003e= 3.6\n    * Requirements for individual WC modeling tools. See [An Introduction to Whole-Cell Modeling](http://docs.karrlab.org/intro_to_wc_modeling/master/0.0.1/installation.html).\n\n2. Install this package \n\n    * Install the latest release from PyPI\n      ```\n      pip install wc_sandbox\n      ```\n\n    * Install the latest revision from GitHub\n      ```\n      pip install git+https://github.com/KarrLab/wc_utils.git#egg=wc_utils\n      pip install git+https://github.com/KarrLab/wc_sandbox.git#egg=wc_sandbox\n      ```\n\n## Examples, tutorial, and documentation\nPlease see the [documentation](https://docs.karrlab.org/wc_sandbox).\n\n## License\nThe package is released under the [MIT license](LICENSE).\n\n## Development team\nThis package was developed by the [Karr Lab](https://www.karrlab.org) at the Icahn School of Medicine at Mount Sinai in New York, USA.\n\n## Questions and comments\nPlease contact the [Karr Lab](mailto:info@karrlab.org) with any questions or comments.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fkarrlab%2Fwc_sandbox","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fkarrlab%2Fwc_sandbox","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fkarrlab%2Fwc_sandbox/lists"}