{"id":15696798,"url":"https://github.com/koriavinash1/fetal-brain-segmentation","last_synced_at":"2025-05-08T22:40:49.384Z","repository":{"id":112521712,"uuid":"119180168","full_name":"koriavinash1/Fetal-Brain-Segmentation","owner":"koriavinash1","description":"Fully automatic technique for fetal brain segmentation using deep convolutional neural network","archived":false,"fork":false,"pushed_at":"2018-08-05T09:18:50.000Z","size":3270,"stargazers_count":13,"open_issues_count":3,"forks_count":6,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-04-20T09:39:58.185Z","etag":null,"topics":["ai","artificial-intelligence","automatic-segmentation","deep-convolutional-neural-networks","deep-learning","fetal-imaging","fmri-analysis","medical-image-analysis","segmentation","unet-image-segmentation"],"latest_commit_sha":null,"homepage":"","language":"Jupyter 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Notebook","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Fetal-Brain-Segmentation\n\n## Introduction\n\nThis repository contains the implementation of 2D UNet architecture for fetal brain segmentation\n\n## Network Architecture\n\n![pipeline](./images/network.png)\n(https://arxiv.org/pdf/1505.04597.pdf)\n\n## Raw data\n\n![data](./images/data.png)\n\nFirst figure shows raw MR image, second hand annotated groundtruth image and last shows weight map for spatial weighted cross entropy loss  \n\u003chr\u003e\n\n## Results\n\n### Model predictions\n\n![prediction](./images/model_predictions.png)\n\n\n### Dice score with epochs\n\n![dice](./images/dice_score.png)\n\n\u003chr\u003e\n\n## How to use?\n\n~~~~\n\ngit clone https://github.com/koriavinash1/Fetal-Brain-Segmentation.git\ncd Fetal-Brain-Segmentation\npip install -r requirements.txt\n\n~~~~\n\n\u003chr\u003e\n\n## Pre-Processing data\n\nRun Generate_Procesed_Data notebook for generating pre-processed data\n\n\n## Folder structure\n\n\u003e ./src consists all source codes\n\n\n\u003e \u003e config -\u003e all initial configurations\n\n\u003e \u003e data_loader -\u003e multithread data loader\n\n\u003e \u003e estimator -\u003e model estimator class\n\n\u003e \u003e network -\u003e network architecture definition\n\n\u003e \u003e runner -\u003e main function\n\n\n``` python runner.py``` for training  and ```python predictor.py``` for testing the model \n\n\u003chr\u003e\n\nIf any comments or issues, pull requests/issues are Welcomed....\n\nThankyou\n\n\n### Contact \n\n* Avinash Kori (avinashgkori@smail.iitm.ac.in)\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fkoriavinash1%2Ffetal-brain-segmentation","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fkoriavinash1%2Ffetal-brain-segmentation","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fkoriavinash1%2Ffetal-brain-segmentation/lists"}