{"id":26675336,"url":"https://github.com/krasnitzlab/scclust","last_synced_at":"2025-03-26T03:17:43.826Z","repository":{"id":132509231,"uuid":"106557810","full_name":"KrasnitzLab/SCclust","owner":"KrasnitzLab","description":"Segmentation and Clustering of Single Cell Sequencing Copy Number Profiles","archived":false,"fork":false,"pushed_at":"2022-08-01T18:43:13.000Z","size":4203,"stargazers_count":0,"open_issues_count":0,"forks_count":1,"subscribers_count":3,"default_branch":"master","last_synced_at":"2024-05-09T07:53:06.009Z","etag":null,"topics":["clustering","r","segmentation","single-cell-genomics"],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/KrasnitzLab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2017-10-11T13:27:51.000Z","updated_at":"2021-12-01T14:52:04.000Z","dependencies_parsed_at":"2023-06-08T03:45:18.523Z","dependency_job_id":null,"html_url":"https://github.com/KrasnitzLab/SCclust","commit_stats":null,"previous_names":[],"tags_count":13,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrasnitzLab%2FSCclust","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrasnitzLab%2FSCclust/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrasnitzLab%2FSCclust/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KrasnitzLab%2FSCclust/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/KrasnitzLab","download_url":"https://codeload.github.com/KrasnitzLab/SCclust/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":245579719,"owners_count":20638679,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["clustering","r","segmentation","single-cell-genomics"],"created_at":"2025-03-26T03:17:43.240Z","updated_at":"2025-03-26T03:17:43.820Z","avatar_url":"https://github.com/KrasnitzLab.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"# SCclust R package\n\n[![DOI](https://zenodo.org/badge/106557810.svg)](https://zenodo.org/badge/latestdoi/106557810)\n\nThe SCclust package implements feature selection based on\nbreakpoints, permutations for FDRs for Fisher test p-values and identification\nof the clone structure in single cell copy number profiles.\n\nThrere are two alternative ways to install SCclust package:\n\n* installation from source;\n\n* intallation as a conda package.\n\n## Installation from source\n\n* Download `SCclust` source package from Github:\n[https://github.com/KrasnitzLab/SCclust/archive/refs/tags/1.0.7.tar.gz](https://github.com/KrasnitzLab/SCclust/archive/refs/tags/1.0.7.tar.gz)\ninto your working directory;\n\n* Run `R` and install the package from downloaded source:\n\n    ```\n    install.packages(\"SCclust-1.0.7.tar.gz\")\n    ```\n\n## Conda installer\n\n* The `SCclust` package can also be installed using KrasnitzLab Anaconda channel. First create a new conda environment:\n\n    ```\n    conda create -n scclust\n    conda activate scclust\n    ```\n    \n    and after that install `SCclust` inside it:\n    \n    ```\n    conda install -c bioconda -c conda-forge -c krasnitzlab scclust\n    ```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fkrasnitzlab%2Fscclust","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fkrasnitzlab%2Fscclust","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fkrasnitzlab%2Fscclust/lists"}