{"id":18189931,"url":"https://github.com/kullrich/treeswitchr","last_synced_at":"2025-10-05T14:32:30.612Z","repository":{"id":238267541,"uuid":"796215156","full_name":"kullrich/TreeSwitchR","owner":"kullrich","description":"TreeSwitchR visualize phylogenetic trees along chromosomes in R","archived":false,"fork":false,"pushed_at":"2024-05-14T12:23:35.000Z","size":56,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"devel","last_synced_at":"2025-02-13T17:29:01.553Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/kullrich.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-05-05T09:37:59.000Z","updated_at":"2024-05-14T12:23:39.000Z","dependencies_parsed_at":"2024-12-21T04:29:06.281Z","dependency_job_id":"e917b900-e7ca-4381-9d26-187581c64cd5","html_url":"https://github.com/kullrich/TreeSwitchR","commit_stats":{"total_commits":9,"total_committers":1,"mean_commits":9.0,"dds":0.0,"last_synced_commit":"d30ea0d4c2793bb3a2f2b6c40b2856347e7c094a"},"previous_names":["kullrich/treeswitchr"],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kullrich%2FTreeSwitchR","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kullrich%2FTreeSwitchR/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kullrich%2FTreeSwitchR/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kullrich%2FTreeSwitchR/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/kullrich","download_url":"https://codeload.github.com/kullrich/TreeSwitchR/tar.gz/refs/heads/devel","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":247675627,"owners_count":20977376,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-03T04:04:34.496Z","updated_at":"2025-10-05T14:32:25.587Z","avatar_url":"https://github.com/kullrich.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"# TreeSwitchR\n\n`TreeSwitchR` visualize phylogenetic trees along chromosomes in R.\n\nGiven a tree file and the corresponding genomic positions, trees are visualized and compared to their corresponding neighbors. Tree topology switches as well as their underlying genomic features are highlighted.\n\n## Installation instructions\n\nGet the latest stable `R` release from\n[CRAN](http://cran.r-project.org/). Then install the `TreeSwitchR` development version from\n[GitHub](https://github.com/kullrich/TreeSwitchR) with:\n\n``` r\ndevtools::install_github(\"kullrich/TreeSwitchR\", dependencies = TRUE)\n```\n\n## Code of Conduct - Participation guidelines\n\nThis repository adhere to [Contributor Covenant](http://contributor-covenant.org) code of conduct for in any interactions you have within this project. (see [Code of Conduct](https://github.com/kullrich/TreeSwitchR/blob/master/CODE_OF_CONDUCT.md))\n\nSee also the policy against sexualized discrimination, harassment and violence for the Max Planck Society [Code-of-Conduct](https://www.mpg.de/11961177/code-of-conduct-en.pdf).\n\nBy contributing to this project, you agree to abide by its terms.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fkullrich%2Ftreeswitchr","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fkullrich%2Ftreeswitchr","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fkullrich%2Ftreeswitchr/lists"}