{"id":32175268,"url":"https://github.com/kvslab/morphman","last_synced_at":"2025-10-21T19:31:30.104Z","repository":{"id":41145655,"uuid":"139582313","full_name":"KVSlab/morphMan","owner":"KVSlab","description":"A collection of tools for manipulation of morphological features in patient-specific geometries","archived":false,"fork":false,"pushed_at":"2024-09-26T14:07:35.000Z","size":62373,"stargazers_count":33,"open_issues_count":15,"forks_count":13,"subscribers_count":6,"default_branch":"master","last_synced_at":"2025-10-17T23:33:08.071Z","etag":null,"topics":["biomedical","geometric-algorithms","morphology","vascular"],"latest_commit_sha":null,"homepage":"https://morphman.readthedocs.io/en/latest/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/KVSlab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2018-07-03T12:46:02.000Z","updated_at":"2025-06-08T18:52:19.000Z","dependencies_parsed_at":"2025-04-14T19:04:53.649Z","dependency_job_id":null,"html_url":"https://github.com/KVSlab/morphMan","commit_stats":null,"previous_names":[],"tags_count":7,"template":false,"template_full_name":null,"purl":"pkg:github/KVSlab/morphMan","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KVSlab%2FmorphMan","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KVSlab%2FmorphMan/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KVSlab%2FmorphMan/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KVSlab%2FmorphMan/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/KVSlab","download_url":"https://codeload.github.com/KVSlab/morphMan/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KVSlab%2FmorphMan/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":280322719,"owners_count":26311121,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-10-21T02:00:06.614Z","response_time":58,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["biomedical","geometric-algorithms","morphology","vascular"],"created_at":"2025-10-21T19:30:45.384Z","updated_at":"2025-10-21T19:31:30.095Z","avatar_url":"https://github.com/KVSlab.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"## [morphMan - Morphological Manipulation](https://morphman.readthedocs.io)\n\n[![Documentation Status](https://readthedocs.org/projects/morphman/badge/?version=latest)](https://morphman.readthedocs.io/en/latest/?badge=latest)\n[![DOI](http://joss.theoj.org/papers/10.21105/joss.01065/status.svg)](https://doi.org/10.21105/joss.01065)\n[![codecov](https://codecov.io/gh/KVSlab/morphMan/branch/master/graph/badge.svg)](https://codecov.io/gh/KVSlab/morphMan)\n[![Conda Version](https://img.shields.io/conda/vn/conda-forge/morphman.svg)](https://anaconda.org/conda-forge/morphman)\n[![CI](https://github.com/kvslab/morphman/actions/workflows/lint_and_test.yaml/badge.svg)](https://github.com/kvslab/morphman/actions/workflows/lint_and_test.yaml)\n\n\n\u003cp align=\"center\"\u003e\n    \u003cimg src=\"https://raw.githubusercontent.com/KVSlab/morphMan/master/docs/source/make_stenosis.png\" width=\"640 height=\"280\" alt=\"Create a stenois\"/\u003e\n\u003c/p\u003e\n\u003cp align=\"center\"\u003e\n    Manipulation of the internal carotid artery, by introducing an artificial stenosis.\n\u003c/p\u003e\n\nDescription\n-----------\nmorphMan (morphological manipulation) is a collection of tools for automated and objective \nmanipulation and reconstruction of morphological features of patient-specific vascular geometries. \nIn the tutorials we examplify the usage\nby manipulating [internal carotid arteries](https://en.wikipedia.org/wiki/Internal_carotid_artery)\n, but the tool can be applied to any geometry with a tubular shape.\n\nThe goal of morphMan is to provide research groups, and other individuals, with a set of tools to investigate the impact\nof altering morphological features in patient-specific geometries. For instance, morphMan can be used to\ninvestigate how cross-sectional area, bifurcation angles, and over all curvature change the local hemodynamics.\n\nAuthors\n-------\nmorphMan is developed by\n\n* Aslak W. Bergersen \n* Henrik A. Kjeldsberg \n\nLicence\n-------\nmorphMan is licensed under the GNU GPL, version 3 or (at your option) any\nlater version.\n\nmorphMan is Copyright (2016-2022) by the authors.\n\nDocumentation\n-------------\nFor an introduction to morphMan, and tutorials, please refer to the [documentation](https://morphman.readthedocs.io/en/latest/).\n\nIf you use wish to use morphMan for journal publications, please cite the following the following journal article for the methods:\n\nBergersen, Aslak W., Henrik A. Kjeldsberg, and Kristian Valen‐Sendstad. \"A Framework for Automated and Objective Modification of Tubular Structures: Application to the Internal Carotid Artery.\" International Journal for Numerical Methods in Biomedical Engineering (2020): e3330.\n\nAnd the journal article from JOSS for the software: \n\nKjeldsberg et al., (2019). morphMan: Automated manipulation of vascular geometries. Journal of Open Source Software, 4(35), 1065, https://doi.org/10.21105/joss.01065\n\nInstallation\n------------\n\nFor reference, morphMan requires the following dependencies: VTK 9.1, Numpy 1.23, SciPy 1.8.1, and VMTK 1.5.\nIf you are on Windows, macOS or Linux you can install all the general dependencies through `conda-forge`.\nFirst install Anaconda or Miniconda, then add `conda-forge` to your channels with:\n```\nconda config --add channels conda-forge\nconda config --set channel_priority strict\n```\n\nOnce the `conda-forge` channel has been enabled, `morphman` can be installed with `conda`:\n\n```\nconda create -n your_environment morphman\n```\n\nor with `mamba`:\n\n```\nmamba create -n your_environment morphman\n```\n\nYou can then activate your environment with `morphman` by running \n\n```\nsource activate your_environment\n```\n\nYou are now all set, and can start manipulating your geometries.\nTo get started, we have created some [tutorials](https://morphman.readthedocs.io/en/latest/getting_started.html) for the different modules within morphMan. \n\nContact\n-------\nThe latest version of this software can be obtained from\n\n  https://github.com/KVSlab/morphMan\n\nPlease report bugs and other issues through the issue tracker at:\n  \n  https://github.com/KVSlab/morphMan/issues\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fkvslab%2Fmorphman","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fkvslab%2Fmorphman","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fkvslab%2Fmorphman/lists"}