{"id":24300868,"url":"https://github.com/lambda-science/lambda-science","last_synced_at":"2025-03-06T12:48:58.928Z","repository":{"id":106213437,"uuid":"436975562","full_name":"lambda-science/lambda-science","owner":"lambda-science","description":null,"archived":false,"fork":false,"pushed_at":"2024-06-24T07:22:29.000Z","size":48,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-03-02T12:48:48.070Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/lambda-science.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2021-12-10T12:43:18.000Z","updated_at":"2024-06-24T07:22:33.000Z","dependencies_parsed_at":"2023-06-07T12:45:39.094Z","dependency_job_id":"bcf1001e-7f05-4481-bba2-97d92f6b7bc6","html_url":"https://github.com/lambda-science/lambda-science","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lambda-science%2Flambda-science","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lambda-science%2Flambda-science/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lambda-science%2Flambda-science/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lambda-science%2Flambda-science/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/lambda-science","download_url":"https://codeload.github.com/lambda-science/lambda-science/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":242213930,"owners_count":20090701,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-01-16T23:18:10.880Z","updated_at":"2025-03-06T12:48:58.893Z","avatar_url":"https://github.com/lambda-science.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"### Hello ! 🐍\n\nI'm **Corentin Meyer**. Currently **AI Engineer** at Alcatel-Lucent Enterprise, I have a **PhD in biomedical AI.**  \n\nAt ALE I work on developping our internal generative AI solutions (LLMs) to support our company internal use-cases. I built and manage our generative AI initiative end to end: from the idea to the PoC up to the industralisation on AWS. I have a broad role as main technical expert and developer while maintaining good cross-departement communication and translating business requirement into technical implementation. On the side I also develop and maintain more classical AI models for sales \u0026 operations units.\n\nPreviously my research focused on applying cutting-edge AI techniques to analyze patient data for genetic diseases, specifically congenital myopathies. I applied modern artificial intelligence techniques to analyze data of patients affected by a family of genetic diseases (congenital myopathies). I've build three open sources tools:\n- [NLMyo](https://github.com/lambda-science/NLMyo)🔧: a toolbox leverage Large Language Models (LLMs such as ChatGPT) to exploit histology reports\n- [MyoQuant](https://github.com/lambda-science/MyoQuant)🔬: a tool to quantify pathological features on muscle biopsies image\n- [IMPatienT](https://github.com/lambda-science/IMPatienT)🗂️: a patient database tool to annotate, process and explore patient biopsy text reports\n\nYou can find all way to reach me and see my work by accessing **my website: [cmeyer.fr](https://cmeyer.fr)**. I also run a blog where I try to communicate on the things I'm working on at [cmeyer.fr/blog/](https://cmeyer.fr/blog/)  \n\n\u003cp align=\"middle\"\u003e\n  \u003ca href=\"https://github.com/lambda-science/NLMyo\"\u003e\n  \u003cimg src=\"https://i.imgur.com/avfbQiE.png\" alt=\"NLMyo Banner\" style=\"border-radius: 25px;\" width=\"33%\" /\u003e\u003c/a\u003e\n    \u003ca href=\"https://github.com/lambda-science/MyoQuant\"\u003e \n  \u003cimg src=\"https://i.imgur.com/mzALgZL.png\" alt=\"MyoQuant Banner\" style=\"border-radius: 25px;\" width=\"33%\" /\u003e\u003c/a\u003e\n      \u003ca href=\"https://github.com/lambda-science/IMPatienT\"\u003e\n  \u003cimg src=\"https://i.imgur.com/iH7UeUs.png\" alt=\"IMPatienT Banner\" style=\"border-radius: 25px;\" width=\"33%\" /\u003e\u003c/a\u003e\n\u003c/p\u003e\n\nHere you can find a tree of all my **GitHub projects**:\n\n\u003cpre style=\"font-family:Menlo,'DejaVu Sans Mono',consolas,'Courier New',monospace\"\u003e🐍 \u003ca href=\"https://cmeyer.fr/\"\u003eCorentin Meyer\u003c/a\u003e\n\u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003e┣━━ \u003c/span\u003e📦 Main Projects\n\u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003e┃   ┣━━ \u003c/span\u003e\u003cspan style=\"font-weight: bold\"\u003e\u003ca href=\"https://github.com/lambda-science/MyoQuant\"\u003emyoquant🔬\u003c/a\u003e\u003c/span\u003e          - \u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003eautomatically quantify pathological features in muscle fiber histology images\u003c/span\u003e\n\u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003e┃   ┣━━ \u003c/span\u003e\u003cspan style=\"font-weight: bold\"\u003e\u003ca href=\"https://github.com/lambda-science/NLMyo\"\u003enlmyo🔧\u003c/a\u003e   \u003c/span\u003e          - \u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003etoolbox to leverage LLMs to exploit histology text reports\u003c/span\u003e\n\u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003e┃   ┣━━ \u003c/span\u003e\u003cspan style=\"font-weight: bold\"\u003e\u003ca href=\"https://github.com/lambda-science/IMPatienT\"\u003eimpatient🗂️\u003c/a\u003e\u003c/span\u003e         - \u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003eweb application to digitize, process and explore multimodal patient data\u003c/span\u003e\n\u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003e┃   ┣━━ \u003c/span\u003e\u003cspan style=\"font-weight: bold\"\u003e\u003ca href=\"https://github.com/lambda-science/MyoQuant-Streamlit\"\u003emyoquant-streamlit\u003c/a\u003e\u003c/span\u003e  - \u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003eweb demo of myoquant using streamlit\u003c/span\u003e\n\u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003e┃   ┣━━ \u003c/span\u003e\u003cspan style=\"font-weight: bold\"\u003e\u003ca href=\"https://github.com/lambda-science/STREAMLINE\"\u003estreamline\u003c/a\u003e\u003c/span\u003e          - \u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003efork of the Streamline autoML pipeline for multiclass classification\u003c/span\u003e\n\u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003e┃   ┣━━ \u003c/span\u003e\u003cspan style=\"font-weight: bold\"\u003e\u003ca href=\"https://github.com/lambda-science/stage-thompson\"\u003eprimate proteins\u003c/a\u003e\u003c/span\u003e    - \u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003eanalysis of gene prediction errors in the proteome of 11 primates\u003c/span\u003e\n\u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003e┃   ┗━━ \u003c/span\u003e\u003cspan style=\"font-weight: bold\"\u003e\u003ca href=\"https://github.com/lambda-science/droso-analysis\"\u003edrosophila proteins\u003c/a\u003e\u003c/span\u003e - \u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003eanalysis of gene prediction errors in the proteome of drosophilas\u003c/span\u003e\n\u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003e┣━━ \u003c/span\u003e🛠️ Work In Progess\n\u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003e┃   ┣━━ \u003c/span\u003e\u003cspan style=\"font-weight: bold\"\u003e\u003ca href=\"https://github.com/lambda-science/thesis\"\u003ethesis\u003c/a\u003e    \u003c/span\u003e          - \u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003emy thesis in writing\u003c/span\u003e\n\u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003e┃   ┣━━ \u003c/span\u003e\u003cspan style=\"font-weight: bold\"\u003e\u003ca href=\"https://github.com/lambda-science/PredEx\"\u003epredex\u003c/a\u003e\u003c/span\u003e              - \u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003etrain and visualize learning classier systems (lcs) for explainable models\u003c/span\u003e\n\u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003e┃   ┗━━ \u003c/span\u003e\u003cspan style=\"font-weight: bold\"\u003e\u003ca href=\"https://github.com/lambda-science/dnd-qa\"\u003ednd-qa🗡️\u003c/a\u003e\u003c/span\u003e           - \u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003echatbot to answer questions about dungeons and dragons spells\u003c/span\u003e\n\u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003e┣━━ \u003c/span\u003e🔗 My Websites\n\u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003e┃   ┣━━ \u003c/span\u003e\u003cspan style=\"font-weight: bold\"\u003e\u003ca href=\"https://cmeyer.fr\"\u003ecmeyer.fr\u003c/a\u003e\u003c/span\u003e           - \u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003epersonal linktree\u003c/span\u003e\n\u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003e┃   ┣━━ \u003c/span\u003e\u003cspan style=\"font-weight: bold\"\u003e\u003ca href=\"https://cmeyer.fr/blog/\"\u003ecmeyer.fr/blog\u003c/a\u003e\u003c/span\u003e      - \u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003epersonal blog\u003c/span\u003e\n\u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003e┃   ┣━━ \u003c/span\u003e\u003cspan style=\"font-weight: bold\"\u003e\u003ca href=\"https://impatient.lbgi.fr\"\u003eimpatient.lbgi.fr\u003c/a\u003e\u003c/span\u003e   - \u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003eimpatient web demo\u003c/span\u003e\n\u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003e┃   ┣━━ \u003c/span\u003e\u003cspan style=\"font-weight: bold\"\u003e\u003ca href=\"https://lbgi.fr/MyoQuant\"\u003elbgi.fr/MyoQuant\u003c/a\u003e\u003c/span\u003e    - \u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003emyoquant web demo\u003c/span\u003e\n\u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003e┃   ┣━━ \u003c/span\u003e\u003cspan style=\"font-weight: bold\"\u003e\u003ca href=\"https://lbgi.fr/NLMyo\"\u003elbgi.fr/NLMyo\u003c/a\u003e   \u003c/span\u003e    - \u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003enlmyo web demo\u003c/span\u003e\n\u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003e┃   ┗━━ \u003c/span\u003e\u003cspan style=\"font-weight: bold\"\u003e\u003ca href=\"https://status.cmeyer.fr/\"\u003estatus.cmeyer.fr\u003c/a\u003e\u003c/span\u003e    - \u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003ewebsite status page\u003c/span\u003e\n\u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003e┣━━ \u003c/span\u003e📚 Teaching and Internships\n\u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003e┃   ┣━━ \u003c/span\u003e\u003cspan style=\"font-weight: bold\"\u003e\u003ca href=\"https://github.com/lambda-science/machine-learning-introduction\"\u003eml intro lecture\u003c/a\u003e\u003c/span\u003e    - \u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003e1st machine-learning introduction lecture at the biotechnology school of strasbourg (esbs)\u003c/span\u003e\n\u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003e┃   ┣━━ \u003c/span\u003e\u003cspan style=\"font-weight: bold\"\u003e\u003ca href=\"https://github.com/lambda-science/Machine-Learning-TD-ESBS\"\u003eml 1st practical\u003c/a\u003e\u003c/span\u003e    - \u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003e1st machine-learning practical at the esbs\u003c/span\u003e\n\u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003e┃   ┣━━ \u003c/span\u003e\u003cspan style=\"font-weight: bold\"\u003e\u003ca href=\"https://github.com/lambda-science/ML-TD-ESBS-2\"\u003eml 2nd practical\u003c/a\u003e\u003c/span\u003e    - \u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003e2nd machine-learning practical at the esbs\u003c/span\u003e\n\u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003e┃   ┣━━ \u003c/span\u003e\u003cspan style=\"font-weight: bold\"\u003e\u003ca href=\"https://github.com/lambda-science/stage-afaf\"\u003eafaf intern\u003c/a\u003e\u003c/span\u003e         - \u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003ecode for afaf internship\u003c/span\u003e\n\u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003e┃   ┗━━ \u003c/span\u003e\u003cspan style=\"font-weight: bold\"\u003e\u003ca href=\"https://github.com/lambda-science/stage-ines-jeremy\"\u003eines intern\u003c/a\u003e\u003c/span\u003e         - \u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003ecode for ines and jeremy internship\u003c/span\u003e\n\u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003e┗━━ \u003c/span\u003e⚰️ Dead and old projects\n\u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003e    ┣━━ \u003c/span\u003e\u003cspan style=\"font-weight: bold\"\u003e\u003ca href=\"https://github.com/lambda-science/pcr-primer-finder\"\u003epcr-primer-finer\u003c/a\u003e\u003c/span\u003e    - \u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003etool to find optimal primers for pcr\u003c/span\u003e\n\u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003e    ┣━━ \u003c/span\u003e\u003cspan style=\"font-weight: bold\"\u003e\u003ca href=\"https://github.com/lambda-science/genetics\"\u003egenetics\u003c/a\u003e\u003c/span\u003e            - \u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003ea web application for genetic sequence analysis\u003c/span\u003e\n\u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003e    ┣━━ \u003c/span\u003e\u003cspan style=\"font-weight: bold\"\u003e\u003ca href=\"https://github.com/lambda-science/genetics-GUI\"\u003egenetics-gui\u003c/a\u003e\u003c/span\u003e        - \u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003ea gui app. for genetic sequence analysis\u003c/span\u003e\n\u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003e    ┣━━ \u003c/span\u003e\u003cspan style=\"font-weight: bold\"\u003e\u003ca href=\"https://github.com/lambda-science/stage-merienne\"\u003ehuntington-rnaseq\u003c/a\u003e\u003c/span\u003e   - \u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003ehungtington disease RNA-seq analysis internship\u003c/span\u003e\n\u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003e    ┗━━ \u003c/span\u003e\u003cspan style=\"font-weight: bold\"\u003e\u003ca href=\"https://github.com/lambda-science/Hara-twitterbot\"\u003etwitter-bot\u003c/a\u003e\u003c/span\u003e         - \u003cspan style=\"color: #808080; text-decoration-color: #808080\"\u003esmall twitter bot to tweet pictures of cute shibas\u003c/span\u003e\n\n\u003cspan style=\"color: #008000; text-decoration-color: #008000\"\u003eFollow me on twitter \u003c/span\u003e\u003cspan style=\"color: #008000; text-decoration-color: #008000; font-weight: bold\"\u003e\u003ca href=\"https://twitter.com/corentinm_py\"\u003e@corentinm_py\u003c/a\u003e\u003c/span\u003e\u003cspan style=\"color: #008000; text-decoration-color: #008000\"\u003e and on my website \u003c/span\u003e\u003cspan style=\"color: #008000; text-decoration-color: #008000; font-weight: bold\"\u003e\u003ca href=\"https://cmeyer.fr\"\u003ecmeyer.fr\u003c/a\u003e\u003c/span\u003e\n\u003c/pre\u003e\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Flambda-science%2Flambda-science","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Flambda-science%2Flambda-science","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Flambda-science%2Flambda-science/lists"}