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Module to process Plink's binary files\n\n`PyPlink` is a Python module to read and write Plink's binary files. Short\ndocumentation available at\n[https://lemieuxl.github.io/pyplink/](https://lemieuxl.github.io/pyplink/).\n\n## Dependencies\n\nThe tool requires a standard [Python](http://python.org/) installation (3.7 or\nhigher are supported) with the following modules:\n\n1. [numpy](http://www.numpy.org/)\n2. [pandas](http://pandas.pydata.org/)\n\nThe tool has been tested on *Linux* only, but should work on *MacOS* and\n*Windows* operating systems as well.\n\n## Installation\n\nUsing `pip`:\n\n```bash\npip install pyplink\n```\n\nUsing `conda`:\n\n```bash\nconda install pyplink -c http://statgen.org/wp-content/uploads/Softwares/pyplink\n```\n\nIt is possible to add the channel to conda's configuration, so that the\n`-c http://statgen.org/...` can be omitted to update or install the package.\nTo add the channel, perform the following command:\n\n```bash\nconda config --add channels http://statgen.org/wp-content/uploads/Softwares/pyplink\n```\n\n### Updating\n\nTo update the module using `pip`:\n\n```bash\npip install -U pyplink\n```\n\nTo update the module using `conda`:\n\n```bash\n# If the channel has been configured (see above)\nconda update pyplink\n\n# Otherwise\nconda update pyplink -c http://statgen.org/wp-content/uploads/Softwares/pyplink\n```\n\n## Testing\n\nTo test the module, just perform the following command:\n\n```console\n$ python -m pyplink.tests\n.............................................\n----------------------------------------------------------------------\nRan 45 tests in 0.334s\n\nOK\n```\n\n## Example\n\nThe following\n[notebook](http://nbviewer.ipython.org/github/lemieuxl/pyplink/blob/master/demo/PyPlink%20Demo.ipynb)\ncontains a demonstration of the `PyPlink` module.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Flemieuxl%2Fpyplink","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Flemieuxl%2Fpyplink","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Flemieuxl%2Fpyplink/lists"}