{"id":16698292,"url":"https://github.com/lgatto/rpx","last_synced_at":"2025-03-21T19:32:24.409Z","repository":{"id":12207172,"uuid":"14813184","full_name":"lgatto/rpx","owner":"lgatto","description":" R Interface to the ProteomeXchange Repository","archived":false,"fork":false,"pushed_at":"2025-02-07T15:57:09.000Z","size":1477,"stargazers_count":5,"open_issues_count":10,"forks_count":2,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-03-18T04:23:37.967Z","etag":null,"topics":["bioconductor","data","mass-spectrometry","proteomexchange","proteomics"],"latest_commit_sha":null,"homepage":"http://lgatto.github.io/rpx/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/lgatto.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2013-11-30T01:14:48.000Z","updated_at":"2025-02-07T15:46:47.000Z","dependencies_parsed_at":"2022-09-24T10:50:42.278Z","dependency_job_id":"b75e625a-0cae-43b2-ac32-8e79c53fb09c","html_url":"https://github.com/lgatto/rpx","commit_stats":{"total_commits":353,"total_committers":20,"mean_commits":17.65,"dds":0.6997167138810199,"last_synced_commit":"a84c0de091c911b86baf440b4e038f99898f318e"},"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lgatto%2Frpx","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lgatto%2Frpx/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lgatto%2Frpx/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lgatto%2Frpx/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/lgatto","download_url":"https://codeload.github.com/lgatto/rpx/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":244855589,"owners_count":20521666,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioconductor","data","mass-spectrometry","proteomexchange","proteomics"],"created_at":"2024-10-12T17:51:26.775Z","updated_at":"2025-03-21T19:32:24.058Z","avatar_url":"https://github.com/lgatto.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"## R Interface to the ProteomeXchange Repository\n\nThre `rpx` package is a simple programmatic interface to proteomics\ndata available in the ProteomeXchange repository. It uses a\nProteomeXchange identifier such as `PXD000001` to find and download\nfiles associated with that project. The official Bioconductor is\n[here](http://bioconductor.org/packages/release/bioc/html/rpx.html). The\nGitHub page allows to browse the documentation and the vignette.\n\n### Installation\n\nTo install the version matching your local R installation from the\nBioconductor repository:\n\n```\nif (!requireNamespace(\"BiocManager\", quietly=TRUE))\n    install.packages(\"BiocManager\")\nBiocManager::install(\"rpx\")\n```\n\nAnd to install the very latest version from GitHub:\n\n```\nBiocManager::install(\"lgatto/rpx\")\n```\n\n\nFor a similar python-based software, see\n[`ppx`](https://github.com/wfondrie/ppx/) by Will Fondrie.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Flgatto%2Frpx","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Flgatto%2Frpx","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Flgatto%2Frpx/lists"}