{"id":16698318,"url":"https://github.com/lgatto/tidies","last_synced_at":"2025-04-10T02:55:38.775Z","repository":{"id":138540270,"uuid":"123306722","full_name":"lgatto/tidies","owner":"lgatto","description":"A Grammar of Data Manipulation for Omics Data","archived":false,"fork":false,"pushed_at":"2020-08-31T16:18:20.000Z","size":250,"stargazers_count":21,"open_issues_count":1,"forks_count":2,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-03-24T04:23:35.840Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://lgatto.github.io/tidies/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/lgatto.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2018-02-28T15:50:01.000Z","updated_at":"2023-11-20T08:50:52.000Z","dependencies_parsed_at":null,"dependency_job_id":"5b38eeed-1fc0-4012-9fa6-57d132a81079","html_url":"https://github.com/lgatto/tidies","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lgatto%2Ftidies","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lgatto%2Ftidies/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lgatto%2Ftidies/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lgatto%2Ftidies/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/lgatto","download_url":"https://codeload.github.com/lgatto/tidies/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":248147554,"owners_count":21055540,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-10-12T17:51:36.186Z","updated_at":"2025-04-10T02:55:38.768Z","avatar_url":"https://github.com/lgatto.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"# A Grammar of Data Manipulation for Omics Data\n\nThe `tidies` package implements tidy principles as defined in\nthe [tidyverse](https://www.tidyverse.org/) packages to omics-type\ndata classes, with (currently at least), an emphasis on quantitative\nproteomics data.\n\nDetails and examples are provides in the\n[vignette](https://lgatto.github.io/tidies/articles/tidies.html). See\nalso my [slides](http://bit.ly/tidies-eurobioc18) for the EuroBioc2018\nconference.\n\n## Installation\n\nFirst, install the [Bioconductor](https://bioconductor.org/)\ndependencies using the `BiocManager` package, that can be installed\nfrom CRAN with `install.packages`.\n\n\n```r\nif (!requireNamespace(\"BiocManager\", quietly = TRUE))\n    install.packages(\"BiocManager\")\nBiocManager::install(\"MSnbase\")\n```\n\nIn case they aren't installed yet, please install `dplyr`, `tibble`\nand `tidyr`:\n\n```r\ninstall.packages(c(\"dplyr\", \"tidyr\", \"tibble\"))\n```\n\nOr just go agread and install the full tidyverse:\n\n```r\ninstall.packages(\"tidyverse\")\n```\n\nYou can now install the `tidies` package from github with:\n\n```r\nBiocManager::install(\"lgatto/tidies\")\n```\n\n## Questions\n\nPlease ask question, report bugs and suggest improvements by opening a\nGitHub [issue](https://github.com/lgatto/tidies/issues).\n\n## Contributing\n\nContributions to the package are more than welcome. If you want to\ncontribute to this package, you should follow the same conventions as\nthe rest of the functions. Please do get in touch (preferable opening\na [github issue](https://github.com/lgatto/tidies/issues/)) to discuss\nany suggestions.\n\nPlease note that this project is released with a [Contributor Code of\nConduct](https://github.com/lgatto/tidies/blob/master/CONDUCT.md). By\nparticipating in this project you agree to abide by its terms.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Flgatto%2Ftidies","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Flgatto%2Ftidies","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Flgatto%2Ftidies/lists"}