{"id":46905893,"url":"https://github.com/libsbmlsim/sbml-sim","last_synced_at":"2026-03-11T01:12:11.118Z","repository":{"id":57666310,"uuid":"336523176","full_name":"libsbmlsim/sbml-sim","owner":"libsbmlsim","description":"Simulator for SBML Models","archived":false,"fork":false,"pushed_at":"2022-03-26T16:16:18.000Z","size":4023,"stargazers_count":1,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-10-25T03:25:32.784Z","etag":null,"topics":["rust","rust-crate","sbml","simulator","systems-biology","systems-biology-simulation"],"latest_commit_sha":null,"homepage":"https://crates.io/crates/sbml-sim","language":"Rust","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"apache-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/libsbmlsim.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE-APACHE.md","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2021-02-06T11:36:48.000Z","updated_at":"2022-04-18T14:18:38.000Z","dependencies_parsed_at":"2022-09-26T20:31:44.149Z","dependency_job_id":null,"html_url":"https://github.com/libsbmlsim/sbml-sim","commit_stats":null,"previous_names":["ballaneypranav/sbml-sim"],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/libsbmlsim/sbml-sim","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/libsbmlsim%2Fsbml-sim","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/libsbmlsim%2Fsbml-sim/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/libsbmlsim%2Fsbml-sim/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/libsbmlsim%2Fsbml-sim/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/libsbmlsim","download_url":"https://codeload.github.com/libsbmlsim/sbml-sim/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/libsbmlsim%2Fsbml-sim/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":30365187,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-03-10T21:41:54.280Z","status":"ssl_error","status_checked_at":"2026-03-10T21:40:59.357Z","response_time":106,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.5:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["rust","rust-crate","sbml","simulator","systems-biology","systems-biology-simulation"],"created_at":"2026-03-11T01:12:10.516Z","updated_at":"2026-03-11T01:12:11.113Z","avatar_url":"https://github.com/libsbmlsim.png","language":"Rust","funding_links":[],"categories":[],"sub_categories":[],"readme":"A simulator for SBML models.\n\nCurrently only parses a model using [sbml-rs](https://crates.io/crates/sbml-rs) and [mathml-rs](https://crates.io/crates/mathml-rs) with limited support.\n\nTo try out, run the following: \n```\ngit clone https://github.com/ballaneypranav/sbml-sim\ngit clone https://github.com/ballaneypranav/sbml-rs\ngit clone https://github.com/ballaneypranav/mathml-rs\ncd sbml-sim\ncargo run [path to model]\n```\n\nAs of now, only Euler, RK45 and RKF methods have been implemented.\nTo try it out, run \n```\ncargo run -- -i {path to model} -t 10 -s 100 -o out.csv -a\n```\nThis runs the RKF45 integrator for 10 seconds over 100 integration steps.\n\nTo test, run:\n```\ncargo test --test core-semantic -- --test-threads=8 --logfile tests/tests.log \u003e tests/tests.full.log\nawk '{ print $2\" \"$1 }' tests/tests.log | sort -u \u003e tests/tests.log.awked; mv tests/tests.log.awked tests/tests.log\nsource tests/venv/bin/activate\npython3 tests/analyze.py tests/tests.log\n```\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Flibsbmlsim%2Fsbml-sim","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Flibsbmlsim%2Fsbml-sim","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Flibsbmlsim%2Fsbml-sim/lists"}