{"id":19434397,"url":"https://github.com/likelet/plotappfortbtools","last_synced_at":"2025-04-24T20:32:02.375Z","repository":{"id":86650875,"uuid":"65454944","full_name":"likelet/PlotAppForTBtools","owner":"likelet","description":"A shiny app for TBtools data plot","archived":false,"fork":false,"pushed_at":"2016-08-15T11:47:19.000Z","size":798,"stargazers_count":29,"open_issues_count":0,"forks_count":2,"subscribers_count":5,"default_branch":"master","last_synced_at":"2025-04-19T12:59:20.707Z","etag":null,"topics":["shiny"],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/likelet.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2016-08-11T09:01:32.000Z","updated_at":"2023-07-13T05:50:55.000Z","dependencies_parsed_at":null,"dependency_job_id":"d8c42fb8-49a4-4eec-a51e-a71ec1b182cf","html_url":"https://github.com/likelet/PlotAppForTBtools","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/likelet%2FPlotAppForTBtools","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/likelet%2FPlotAppForTBtools/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/likelet%2FPlotAppForTBtools/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/likelet%2FPlotAppForTBtools/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/likelet","download_url":"https://codeload.github.com/likelet/PlotAppForTBtools/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":250704788,"owners_count":21473763,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["shiny"],"created_at":"2024-11-10T14:46:19.941Z","updated_at":"2025-04-24T20:32:01.917Z","avatar_url":"https://github.com/likelet.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"# PlotAppForTBtools V1.0.1\n[TBtools](https://github.com/CJ-Chen/TBtools/releases) is a Toolset written by CJ-Chen for wet-lab biologists.It aims at facilitating some common and elaborate but simple molecular analysis tasks such as sequences extract, gene set functional enrichment It is easy to use and can run in all Operating system including Mac, Linux, Windows, which has Java run time environment higher than 1.6 . However, TBtools may mainly focus on data analysis procedure which make it difficult to plot fancy figures as well as being publishable. To cover the shortage, we implement an interactive plot websever using shiny programing env, and named TBploter\n\n[Click here to redirect to TRploter website.](http://202.116.161.95:3839/sample-apps/PlotAppForTBtools/inst/TBploter/)\u003cbr /\u003e\n**Screen shoot of TBploter**\n\u003cimg src=\"inst/TBploter/www/image/screenshot.png\"\u003e\n\n### Function gallary\n**GOenriment ploter**\n\u003cimg src=\"inst/TBploter/www/image/GOanalysis.png\"\u003e\n**KEGGenrichment ploter**\n\u003cimg src=\"inst/TBploter/www/image/KEGGanalysis.png\"\u003e\n\n### Install dependencies\nTo check the dependencies installed correctly, this command can help users to check the status of each installation\u003cbr/\u003e\n```R\nlibrary(\"Packages for check\")\n```\nCode for install dependencies R packages \n```R\ncDep \u003c- c(\"ggplot2\",\"shiny\",\"shinyBS\",\"shinydashboard\",\"ggthemes\",\"DT\")\n\n###INSTALLED PACKAGES\n#get installed list\ninst \u003c- packageStatus()$inst\n\n#check and install DEPENDENCIES from CRAN\nfor(i in 1:length(cDep)){\n  tag = which(inst$Package == cDep[i])\n  if(length(tag)){\n    remove.packages(cDep[i])\n  }\n  install.packages(cDep[i])\n}\n\n```\n### Install TBploter\nTo install the latest development build directly from GitHub, run this:\n\n```R\nif (!require(\"devtools\"))\n  install.packages(\"devtools\")\ndevtools::install_github(\"likelet/PlotAppForTBtools\")\n```\n### Update Information\n####2016-8-15\nadd tiff plot function \n\n### Designers:\nQi Zhao, zhaoqi3@mail2.sysu.edu.cn\u003cbr/\u003e\n\n### Developers:\nQi Zhao, zhaoqi3@mail2.sysu.edu.cn \u003cbr/\u003e\nChenjie Chen,120509419@qq.com\n\n### Maintainer:\nQi Zhao\nPlease feel free contact us. \u003cbr/\u003e\n\n### Copyright\nMIT license\n\n### Citation \nduring preparation\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Flikelet%2Fplotappfortbtools","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Flikelet%2Fplotappfortbtools","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Flikelet%2Fplotappfortbtools/lists"}