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image:: https://travis-ci.org/linuxluigi/PyCellFinder.svg?branch=master\n    :target: https://travis-ci.org/linuxluigi/PyCellFinder\n\n.. image:: https://coveralls.io/repos/github/linuxluigi/PyCellFinder/badge.svg?branch=master\n    :target: https://coveralls.io/github/linuxluigi/PyCellFinder?branch=master\n\n.. image:: https://readthedocs.org/projects/pycellfinder/badge/?version=latest\n    :target: https://pycellfinder.readthedocs.io/en/latest/?badge=latest\n    :alt: Documentation Status\n\nIt's mostly an interface for `OpenCV \u003chttps://opencv.org/\u003e`_ special make for counting cells on a picture.\n\n\nQuickinstall\n------------\n\nTo install this from the internet use pip or follow the\n`install instructions \u003chttps://pycellfinder.readthedocs.io/en/latest/install.html\u003e`_::\n\n    $ python3 -m pip install git+git://github.com/linuxluigi/PyCellFinder.git\n\nUsage\n-----\n\nMinimal Params\n^^^^^^^^^^^^^^\n\nUse it with the default parameters::\n\n    $ pycellfinder -i path_to_your_image\n\nThe output presents the count of found objects in the image.\n\nOptional Params\n^^^^^^^^^^^^^^^\n\n===========================================  ===============  ======================================================\nusage                                        default value    description\n===========================================  ===============  ======================================================\n-h, --help                                                    show a help message and exit\n--version, -v                                                 show program's version number and exit\n--input INPUT, -i INPUT                                       path to input file\n--output OUTPUT, -o OUTPUT                                    path to output file\n--plot PLOT, -p PLOT                                          set True for plot output image\n--threshold THRESHOLD, -t THRESHOLD          16               threshold level\n--min_size MIN                                                min object size\n--max_size MAX                                                max object size\n--color COLOR                                                 filter by color 0=Black 255=White\n--circularity CIRCULARITY                                     filter by circularity, float value between 0.0 \u0026 1.0\n--convexity CONVEXITY                                         filter by convexity, float value between 0.0 \u0026 1.0\n--inertia INERTIA                                             filter by inertia\n===========================================  ===============  ======================================================","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Flinuxluigi%2Fpycellfinder","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Flinuxluigi%2Fpycellfinder","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Flinuxluigi%2Fpycellfinder/lists"}