{"id":22632356,"url":"https://github.com/lmdu/krait","last_synced_at":"2025-04-16T02:53:50.653Z","repository":{"id":23729993,"uuid":"75283253","full_name":"lmdu/krait","owner":"lmdu","description":"An ultrafast tool for genome-wide survey of microsatellites and primer design","archived":false,"fork":false,"pushed_at":"2024-10-16T01:21:29.000Z","size":96130,"stargazers_count":38,"open_issues_count":22,"forks_count":9,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-03-29T04:28:21.990Z","etag":null,"topics":["microsatellite","primer","repeats","tandem"],"latest_commit_sha":null,"homepage":"http://krait.biosv.com","language":"HTML","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"agpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/lmdu.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2016-12-01T10:48:25.000Z","updated_at":"2024-10-16T01:21:33.000Z","dependencies_parsed_at":"2022-09-10T19:51:11.360Z","dependency_job_id":"3b630108-6eb4-477b-b9ca-f96baa54a6dc","html_url":"https://github.com/lmdu/krait","commit_stats":null,"previous_names":[],"tags_count":38,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lmdu%2Fkrait","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lmdu%2Fkrait/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lmdu%2Fkrait/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lmdu%2Fkrait/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/lmdu","download_url":"https://codeload.github.com/lmdu/krait/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":249187586,"owners_count":21226933,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["microsatellite","primer","repeats","tandem"],"created_at":"2024-12-09T02:17:11.143Z","updated_at":"2025-04-16T02:53:50.637Z","avatar_url":"https://github.com/lmdu.png","language":"HTML","funding_links":[],"categories":[],"sub_categories":[],"readme":"\u003ch2\u003e\n\tRecommended to use Krait2 \u003ca href=\"https://github.com/lmdu/krait2\"\u003ehttps://github.com/lmdu/krait2\u003c/a\u003e\n\u003c/h2\u003e\n\u003cp align=\"center\"\u003e\u003cimg width=\"100\" src=\"src/icons/krait_logo.png\"\u003e\u003c/p\u003e\n\u003cp align=\"center\"\u003e\n\t\u003ca href=\"https://github.com/lmdu/krait/actions/workflows/build.yml\"\u003e\u003cimg src=\"https://github.com/lmdu/krait/actions/workflows/build.yml/badge.svg\"\u003e\u003c/a\u003e\n\t\u003ca href=\"https://kraitms.readthedocs.io/en/latest/?badge=latest\"\u003e\u003cimg src=\"https://readthedocs.org/projects/kraitms/badge/?version=latest\"\u003e\u003c/a\u003e\n\t\u003cimg src=\"https://img.shields.io/github/downloads/lmdu/krait/total.svg\"\u003e\n\t\u003cimg src=\"https://img.shields.io/github/release/lmdu/krait.svg\"\u003e\n\t\u003cimg src=\"https://img.shields.io/github/license/lmdu/krait.svg\"\u003e\n\t\u003cimg src=\"https://img.shields.io/badge/platform-win | linux | mac-orange.svg\"\u003e\n\u003c/p\u003e\n\u003ch1 align=\"center\"\u003eKrait: Microsatellite investigation and primer design\u003c/h1\u003e\n\n\u003cp align=\"center\"\u003e\n\t\u003cimg src=\"demo.gif\" width=\"80%\"\u003e\n\u003c/p\u003e\n\n# Table of Contents\n* [Introduction](#introduction)\n* [Features](#features)\n* [Download](#download)\n* [Documentation](#documentation)\n* [Citation](#citation)\n\n# Introduction\nKrait is a robust and ultrafast tool with a user-friendly graphic interface for genome-wide investigation of microsatellites, which attempts to overcome the limitations of the currently available tools. Krait is written in Python and can be run as a standalone desktop application on Windows, Linux or Mac systems without dependencies. The microsatellite search engine is written in C and compiled as Python modules for import into Krait\n\n# Features\n* Identification of perfect SSRs\n* Identification of imperfect SSRs (iSSRs)\n* Identification of compound SSRs (cSSRs)\n* Identification of VNTRs from extremely large genome\n* Locating the SSRs in gene coding region\n* Design primer for microsatellite\n* Statistical analysis and plotting\n* Supporting gzip compressed fasta as input file\n* Supporting export FASTA, GFF3 or CSV\n* Downloading DNA sequence from NCBI database\n\n# Download\n[https://github.com/lmdu/krait/releases](https://github.com/lmdu/krait/releases)\n\n# Documentation\nDownload URL: [http://krait.biosv.com/en/latest](http://krait.biosv.com/en/latest)\n\n中国镜像下载地址: [https://big.cdu.edu.cn/software/krait](https://big.cdu.edu.cn/software/krait)\n\n# Citation\nDu L, Zhang C, Liu Q, Zhang X, Yue B (2018) Krait: an ultrafast tool for genome-wide survey of microsatellites and primer design. Bioinformatics. 34(4):681-683. [10.1093/bioinformatics/btx665](https://doi.org/10.1093/bioinformatics/btx665)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Flmdu%2Fkrait","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Flmdu%2Fkrait","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Flmdu%2Fkrait/lists"}