{"id":24394482,"url":"https://github.com/loremod/go2hpo","last_synced_at":"2025-06-28T18:05:57.487Z","repository":{"id":271708517,"uuid":"899520393","full_name":"loremod/GO2HPO","owner":"loremod","description":"GO2HPO is a Python package designed to create association rules that classify genes to related phenotypes based on their annotations.","archived":false,"fork":false,"pushed_at":"2025-02-03T09:36:00.000Z","size":138,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-02-03T10:32:12.551Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/loremod.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-12-06T12:43:32.000Z","updated_at":"2025-02-03T09:36:03.000Z","dependencies_parsed_at":null,"dependency_job_id":"a4e478a2-5618-43c3-b9b8-7d505895f331","html_url":"https://github.com/loremod/GO2HPO","commit_stats":null,"previous_names":["loremod/go2hpo"],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/loremod%2FGO2HPO","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/loremod%2FGO2HPO/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/loremod%2FGO2HPO/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/loremod%2FGO2HPO/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/loremod","download_url":"https://codeload.github.com/loremod/GO2HPO/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":243330259,"owners_count":20274037,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-01-19T19:59:53.892Z","updated_at":"2025-03-13T02:44:07.553Z","avatar_url":"https://github.com/loremod.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# GO2HPO\n\nGO2HPO is a Python package designed to create association rules that classify genes to related phenotypes based on their annotations.\n\n---\n\n## Features\n- Extract and process annotation data related to genes and phenotypes.\n- Analyze data to create association rules. (TO DO)\n- Allows to be easily configurable and extendable. (TO DO)\n\n---\n\n## Installation\n\nTo install GO2HPO, follow these steps:\n\n### **1. Clone the Repository**\nClone this repository to your local machine:\n```bash\ngit clone https://github.com/loremod/GO2HPO.git\ncd GO2HPO\n```\n\n### **2. Set Up a Virtual Environment**\nCreate and activate a virtual environment:\n```bash\n# On Windows\npython -m venv venv\nvenv\\Scripts\\activate\n\n# On Linux/Mac\npython3 -m venv venv\nsource venv/bin/activate\n```\n\n### **3. Install the Package**\nInstall the package in editable mode (TEMPORARILY):\n```bash\npip install -e .\n```\n\n---\n\n## Usage\n\n### **Importing the Modules**\nAfter installation, you can import and use the package in your Python scripts or interactive sessions:\n\n```python\nfrom GO2HPO import DataManager, LogManager\n\n# Example usage\ndata_manager = DataManager()\n#....\n#....\ndataset = data_manager.get_dataset(hpo_list=[\"HP:0004322\"], go_list=[\"GO:0008150\"])\nprint(dataset)\n```\n\n---\n\n## Repository Structure\n```\nGO2HPO/\n├── src/\n│   ├── GO2HPO/\n│   │   ├── __init__.py\n│   │   ├── dataManager.py\n│   │   ├── LogManager.py\n│   │   ├── dataImportExport.py\n│   │   ├── StatisticalAnalyzer.py\n├── setup.py\n├── requirements.txt\n├── README.md\n├── LICENSE\n```\n\n---\n\n## Dependencies\n\n- `numpy`\n- `pandas`\n- `joblib`\n- Others, like the ones for the generitic algorithm (TO DO)\n\n---\n\n\n**Lorenzo Modica**\n\nEmail: [lorenzomod@hotmail.it](mailto:lorenzomod@hotmail.it)\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Floremod%2Fgo2hpo","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Floremod%2Fgo2hpo","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Floremod%2Fgo2hpo/lists"}