{"id":16873638,"url":"https://github.com/lpantano/degreport","last_synced_at":"2025-03-17T06:31:31.141Z","repository":{"id":14985111,"uuid":"17710312","full_name":"lpantano/DEGreport","owner":"lpantano","description":"Create a cromphensive report of DEG list coming from any analysis of RNAseq data","archived":false,"fork":false,"pushed_at":"2024-02-27T23:03:53.000Z","size":54182,"stargazers_count":24,"open_issues_count":16,"forks_count":16,"subscribers_count":5,"default_branch":"main","last_synced_at":"2025-02-27T10:47:46.698Z","etag":null,"topics":["bioconductor","differential-expression","qc","r","report","rna-seq","smallrna"],"latest_commit_sha":null,"homepage":"http://lpantano.github.io/DEGreport/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/lpantano.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null}},"created_at":"2014-03-13T13:06:49.000Z","updated_at":"2024-11-07T17:15:26.000Z","dependencies_parsed_at":"2023-01-11T20:22:45.771Z","dependency_job_id":"67748111-9d10-4249-b37c-cc384dc526f4","html_url":"https://github.com/lpantano/DEGreport","commit_stats":{"total_commits":535,"total_committers":22,"mean_commits":"24.318181818181817","dds":"0.27850467289719627","last_synced_commit":"0e961bfc129aab8b70e50892cb017f6668002e1a"},"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lpantano%2FDEGreport","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lpantano%2FDEGreport/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lpantano%2FDEGreport/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lpantano%2FDEGreport/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/lpantano","download_url":"https://codeload.github.com/lpantano/DEGreport/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":243847062,"owners_count":20357317,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioconductor","differential-expression","qc","r","report","rna-seq","smallrna"],"created_at":"2024-10-13T15:26:27.530Z","updated_at":"2025-03-17T06:31:26.130Z","avatar_url":"https://github.com/lpantano.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"# DEGreport\n\n\u003cimg src=\"https://raw.githubusercontent.com/lpantano/DEGreport/main/inst/sticker/degreport.png\" width=\"150\" height=\"150\" align=\"right\"/\u003e\n\n\n[![Build status](https://secure.travis-ci.org/lpantano/DEGreport.png)](https://travis-ci.org/lpantano/DEGreport)\n[![Project Status: Active - The project has reached a stable, usable state and is being actively developed.](http://www.repostatus.org/badges/latest/active.svg)](http://www.repostatus.org/#active)\n[![BioC Downloads](http://bioconductor.org//shields/downloads/DEGreport.svg)](http://bioconductor.org/packages/3.6/bioc/html/DEGreport.html)\n[![coverage](https://img.shields.io/codecov/c/github/lpantano/DEGreport/master.svg)](https://codecov.io/github/lpantano/DEGreport?branch=master)\n[![Support this project by running your production jobs at BatchX](https://images.batchx.io/gh-badge-logo.svg)](https://platform.batchx.io/lpantano-team/tools/degreport%2Fdeg-patterns \"Support this project by running your production jobs at BatchX\")\n\nQCs, figures and analyses after differential expression with DESeq2 or other similar tool.\n\nPantano L (2017). DEGreport: Report of DEG analysis. R package version 1.13.8. \n\nDOI: [10.18129/B9.bioc.DEGreport](https://doi.org/doi:10.18129/B9.bioc.DEGreport)\n\n\n## Installation\n\nThis is an [R][] package.\n\n### [Bioconductor][] stable version\n\n```r\nif (!requireNamespace(\"BiocManager\", quietly=TRUE))\n    install.packages(\"BiocManager\")\nBiocManager::install(\"DEGreport\")\n```\n\n### [Bioconductor][] latest version\n\n```r\ndevtools::install_git(\"https://git@git.bioconductor.org/packages/DEGreport\")\n```\n\n### [devtools][] unstable version\n\n```r\ninstall.packages(\"devtools\")\ndevtools::install_github(\"lpantano/DEGreport\")\n```\n\nLoad the package and learn what to do:\n\n`browseVignettes(\"DEGreport\")`\n\nHere is the last devel [vignette](https://bioconductor.org/packages/devel/bioc/vignettes/DEGreport/inst/doc/DEGreport.pdf).\n\n[Bioconductor]: https://bioconductor.org\n[bcbio-nextgen]: https://github.com/chapmanb/bcbio-nextgen\n[devtools]: https://cran.r-project.org/package=devtools\n[R]: https://www.r-project.org\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Flpantano%2Fdegreport","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Flpantano%2Fdegreport","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Flpantano%2Fdegreport/lists"}