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[![License](https://img.shields.io/badge/license-Apache--2.0-blue.svg)](https://github.com/LREN-CHUV/mip-sdm/blob/master/LICENSE)\n\n\n# MIP Software Delivery Machine powered by [Atomist][atomist]\n\n[![atomist sdm goals](http://badge.atomist.com/T29E48P34/atomist/blank-sdm-seed/0aaf5b12-ff68-4e22-bcf6-9b84c49dae19)](https://app.atomist.com/workspace/T29E48P34)\n[![npm version](https://img.shields.io/npm/v/@atomist/blank-sdm.svg)](https://www.npmjs.com/package/@atomist/blank-sdm)\n\n[Atomist][atomist] software delivery machine (SDM) customised for HBP Medical team.\n\nSee the [Atomist documentation][atomist-doc] for more information on\nwhat SDMs are and what they can do for you using the Atomist API for\nsoftware.\n\n[atomist-doc]: https://docs.atomist.com/ (Atomist Documentation)\n\n## Functions provided\n\n### Code generation for new projects\n\n#### atomist create meta db setup\n\nCreates a new database setup project that will insert into a database the metadata describing the list of variables and their taxonomy.\n\nThe project will use [Flyway Database migrations](flywaydb) to create the tables and insert data in the target database.\n\n#### atomist create data db setup\n\nCreates a new database setup project that will insert into a database the features of a dataset.\n\nThe project will use [Flyway Database migrations](flywaydb) to create the tables and insert data in the target database.\n\n### Upgrades for existing projects\n\n#### atomist upgrade data db setup\n\nUpgrade a project derived from data db setup, and upgrade it to the latest version of data-db-setup or mip-cde-data-db-setup\n\n## Additional functionality\n\nIn addition to commands executed from Slack or from the command line, Atomist continuously monitors Github code repositories and can perform automatically additional actions.\n\n### Autofixes\n\nThe following autofixes are provided and applied on each commit on projects monitored by Atomist\n\n#### build.sh\n\nThis build script is standardised when Atomist detects that captain is used to build the project.\n\n### .circleci/config.yml\n\nAdd a webhook to notify Atomist on CircleCi builds\n\n## Prerequisites\n\nSee the [Atomist Developer documentation][atomist-dev] for\ninstructions on setting up your development environment.  Briefly, you\nwill need [Git][git], [Node.js][node], and the [Atomist\nCLI][atomist-cli] installed and properly configured on your system.\nWith these installed, you can run this SDM in local mode.\n\nTo run this SDM for your team, you will need an Atomist workspace.\nSee the [Atomist Getting Started Guide][atomist-start] for\ninstructions on how to get an Atomist workspace and connect it to your\nsource code repositories, continuous integration, chat platform, etc.\n\n[atomist-dev]: https://docs.atomist.com/developer/prerequisites/ (Atomist - Developer Prerequisites)\n[git]: https://git-scm.com/ (Git)\n[atomist-cli]: https://github.com/atomist/cli (Atomist Command-Line Interface)\n[atomist-start]: https://docs.atomist.com/user/ (Atomist - Getting Started)\n\n## Running\n\nSee the [Atomist Developer documentation][atomist-dev] for details on\nhow to run this SDM.  Briefly, once the prerequisites are met on your\nsystem you can start the SDM in local mode with the following command:\n\n```\n$ atomist start --local\n```\n\nThe Atomist documentation for [running SDMs][atomist-run] has\ninstructions for connecting and SDM to the Atomist API for software\nand running an SDM in various environments.\n\n[atomist-run]: https://docs.atomist.com/developer/run/ (Atomist - Running SDMs)\n\n## Support\n\nGeneral support questions should be discussed in the `#support`\nchannel in the [Atomist community Slack workspace][slack].\n\nIf you find a problem, please create an [issue][].\n\n[issue]: https://github.com/atomist/blank-sdm/issues\n\n## Development\n\nYou will need to install [Node.js][node] to build and test this\nproject.\n\n[node]: https://nodejs.org/ (Node.js)\n\n### Build and test\n\nInstall dependencies.\n\n```\n$ npm install\n```\n\nUse the `build` package script to compile, test, lint, and build the\ndocumentation.\n\n```\n$ npm run build\n```\n\n### Release\n\nReleases are handled via the [Atomist SDM][atomist-sdm].  Just press\nthe 'Approve' button in the Atomist dashboard or Slack.\n\n[atomist-sdm]: https://github.com/atomist/atomist-sdm (Atomist Software Delivery Machine)\n\n---\n\nCreated by [Atomist][atomist].\nNeed Help?  [Join our Slack workspace][slack].\n\n[atomist]: https://atomist.com/ (Atomist - How Teams Deliver Software)\n[slack]: https://join.atomist.com/ (Atomist Community Slack)\n[flywaydb]: https://flywaydb.org/ (Flyway Database migrations)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Flren-chuv%2Fmip-sdm","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Flren-chuv%2Fmip-sdm","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Flren-chuv%2Fmip-sdm/lists"}