{"id":18046615,"url":"https://github.com/ltla/counterspell2018","last_synced_at":"2026-03-02T22:44:59.905Z","repository":{"id":82716744,"uuid":"140547751","full_name":"LTLA/Counterspell2018","owner":"LTLA","description":"UU: Counter target spell.","archived":false,"fork":false,"pushed_at":"2018-10-16T04:05:54.000Z","size":43,"stargazers_count":8,"open_issues_count":0,"forks_count":0,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-02-10T12:29:09.524Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"TeX","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/LTLA.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2018-07-11T08:48:20.000Z","updated_at":"2023-02-28T05:44:21.000Z","dependencies_parsed_at":null,"dependency_job_id":"7e45c67b-c0c3-497b-bbda-d8eef4a5451a","html_url":"https://github.com/LTLA/Counterspell2018","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/LTLA%2FCounterspell2018","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/LTLA%2FCounterspell2018/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/LTLA%2FCounterspell2018/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/LTLA%2FCounterspell2018/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/LTLA","download_url":"https://codeload.github.com/LTLA/Counterspell2018/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":247288092,"owners_count":20914298,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-10-30T19:08:10.974Z","updated_at":"2026-03-02T22:44:59.863Z","avatar_url":"https://github.com/LTLA.png","language":"TeX","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Criticisms of MAGIC in scRNA-seq data\n\nThis repository contains code to explore some of the consequences of using MAGIC in scRNA-seq data.\nThe `report` subdirectory contains LaTeX files for the report, which you can compile yourself if you know how. \nThe `scripts` subdirectory contains R code to reproduce the analyses described in the report:\n\n- `nostruct_sim.R`, to examine the effect of using MAGIC in a simulation without any structure.\n- `structloss_sim.R`, involving a simulation containing primary and secondary separations.\n- `fakede_sim.R`, involving DE analysis between two well-separated subpopulations.\n- `run_ercc.R`, to examine the effect of using MAGIC on the ERCC data set from 10X Genomics.\n- `run_293t.R`, to examine the effect of using MAGIC on the 293T data set from 10X Genomics.\n- `run_tb.R`, to test behaviour when combining B and T cells.\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fltla%2Fcounterspell2018","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fltla%2Fcounterspell2018","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fltla%2Fcounterspell2018/lists"}