{"id":18046622,"url":"https://github.com/ltla/dacpet","last_synced_at":"2025-04-05T04:24:55.074Z","repository":{"id":18644332,"uuid":"21850981","full_name":"LTLA/dacpet","owner":"LTLA","description":"An R package for ChIA-PET data analysis","archived":false,"fork":false,"pushed_at":"2014-11-18T22:11:46.000Z","size":3024,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-02-10T12:29:11.568Z","etag":null,"topics":["chia-pet","r"],"latest_commit_sha":null,"homepage":null,"language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/LTLA.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2014-07-15T07:42:20.000Z","updated_at":"2017-02-28T11:42:31.000Z","dependencies_parsed_at":"2022-09-24T16:25:30.375Z","dependency_job_id":null,"html_url":"https://github.com/LTLA/dacpet","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/LTLA%2Fdacpet","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/LTLA%2Fdacpet/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/LTLA%2Fdacpet/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/LTLA%2Fdacpet/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/LTLA","download_url":"https://codeload.github.com/LTLA/dacpet/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":247288124,"owners_count":20914306,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["chia-pet","r"],"created_at":"2024-10-30T19:08:14.004Z","updated_at":"2025-04-05T04:24:55.052Z","avatar_url":"https://github.com/LTLA.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"dacpet\n======\n\nAn R package for ChIA-PET data analysis\n\nThis package provides methods for linker splitting, tag pair counting, normalization and detection of specific interactions for ChIA-PET data. It is based primarily on the statistical methods in the edgeR package. Potential users are directed to peruse the user's guide (found in `package/inst/doc`) to implement their own analyses, and to understand some of the theory behind the pipeline.\n\nTo install this package, make sure that the latest version of R is installed. Then, at the R prompt, type:\n```R\nsource(\"http://bioconductor.org/biocLite.R\")\nuseDevel()\nbiocLite(c('edgeR', 'Rsamtools', 'GenomicRanges', 'rhdf5', 'csaw'))\ndevtools::install_github(\"LTLA/dacpet/package\")\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fltla%2Fdacpet","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fltla%2Fdacpet","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fltla%2Fdacpet/lists"}