{"id":16649657,"url":"https://github.com/luispedro/waldo","last_synced_at":"2025-07-16T05:41:20.657Z","repository":{"id":677640,"uuid":"321287","full_name":"luispedro/waldo","owner":"luispedro","description":"Waldo Project","archived":false,"fork":false,"pushed_at":"2015-10-20T16:41:34.000Z","size":3934,"stargazers_count":2,"open_issues_count":11,"forks_count":3,"subscribers_count":5,"default_branch":"master","last_synced_at":"2025-05-10T21:35:06.511Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/luispedro.png","metadata":{"files":{"readme":"README.rst","changelog":null,"contributing":null,"funding":null,"license":"COPYING.MIT","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2009-09-29T17:32:19.000Z","updated_at":"2022-04-19T09:04:15.000Z","dependencies_parsed_at":"2022-07-05T09:24:26.626Z","dependency_job_id":null,"html_url":"https://github.com/luispedro/waldo","commit_stats":null,"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/luispedro/waldo","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/luispedro%2Fwaldo","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/luispedro%2Fwaldo/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/luispedro%2Fwaldo/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/luispedro%2Fwaldo/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/luispedro","download_url":"https://codeload.github.com/luispedro/waldo/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/luispedro%2Fwaldo/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":265279496,"owners_count":23739762,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-10-12T09:11:29.839Z","updated_at":"2025-07-16T05:41:20.634Z","avatar_url":"https://github.com/luispedro.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"Waldo: Where Proteins Are\n-------------------------\n\nWaldo tells what everyone already knows.\n\nWe have a manuscript in preparation. If you use this in a publication, please\nlet us know so we can (to the best of our knowledge), give you the right\ncitation.\n\nInstallation\n............\n\nDependencies\n~~~~~~~~~~~~\n\n- python\n- lxml\n- sqlalchemy\n- bottle\n\nbottle is only needed if wish to run the web application (i.e., if you only\nusing the local programming API, then you can skip this step).\n\nUnder a debian or Ubuntu system, the following commands will install all needed\npackages::\n\n    sudo apt-get install python-lxml\n    sudo apt-get install python-sqlalchemy\n    sudo apt-get install python-bottle\n\nInstallation\n~~~~~~~~~~~~\n\nYou can run the ``install.sh`` file to get everything working::\n\n    ./install.sh\n\nThe individual steps are::\n\n    python setup.py install\n\nThis is the standard Python installation command. In order to start using\nwaldo, you need to download all the database files and build the index. The\nutility script ``update-waldo`` should accomplish this::\n\n    update-waldo --user\n    update-waldo\n    update-waldo --datadir /path/to/datadir --database database.sqlite3\n\nThere are three variations (shown above):\n\n1. ``--user`` (the default for ``install.sh``) installs waldo locally for this\n   user (under ``$HOME/.local/share/waldo``)\n2. Without an argument, it installs it system-wide (you need to have write\n   access to ``/var/lib/waldo``\n3. You can specify exactly where to store the data.\n\nThe ``datadir`` is where waldo will store the downloaded information. It\ndefaults to ``/var/lib/waldo/data``. You can also specify where to store the\ndatabase file (default is ``/var/lib/waldo/waldo.sqlite3``).\n\nAdditionally, you can use the ``--unsafe`` flag to speed up the indexing, but\nif you interrupt the process, the database may be broken::\n\n    update-waldo --user --unsafe\n\nRunning the Webapp\n..................\n\nIf you have installed waldo as above, you should execute::\n\n    python woof/woof.py\n\nThen point your browser to http://localhost:8000/\n\nLinks\n.....\n\n- documentation: http://waldo.readthedocs.org/en/latest/\n- github: https://github.com/luispedro/waldo\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fluispedro%2Fwaldo","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fluispedro%2Fwaldo","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fluispedro%2Fwaldo/lists"}