{"id":19554654,"url":"https://github.com/m4tx/idencomp","last_synced_at":"2026-06-09T22:31:22.885Z","repository":{"id":47216746,"uuid":"514891796","full_name":"m4tx/idencomp","owner":"m4tx","description":"Attempt on building a high-performance compression tool for genetic data","archived":false,"fork":false,"pushed_at":"2023-03-01T01:01:16.000Z","size":12082,"stargazers_count":0,"open_issues_count":5,"forks_count":0,"subscribers_count":1,"default_branch":"master","last_synced_at":"2025-11-19T22:18:49.353Z","etag":null,"topics":["compression","fastq","genetic-data","rust"],"latest_commit_sha":null,"homepage":"","language":"Rust","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/m4tx.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2022-07-17T16:09:20.000Z","updated_at":"2023-01-31T20:04:47.000Z","dependencies_parsed_at":"2024-11-11T04:39:12.620Z","dependency_job_id":null,"html_url":"https://github.com/m4tx/idencomp","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/m4tx/idencomp","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/m4tx%2Fidencomp","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/m4tx%2Fidencomp/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/m4tx%2Fidencomp/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/m4tx%2Fidencomp/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/m4tx","download_url":"https://codeload.github.com/m4tx/idencomp/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/m4tx%2Fidencomp/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":34129072,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-05-26T15:22:16.424Z","status":"online","status_checked_at":"2026-06-09T02:00:06.510Z","response_time":63,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["compression","fastq","genetic-data","rust"],"created_at":"2024-11-11T04:28:28.192Z","updated_at":"2026-06-09T22:31:22.865Z","avatar_url":"https://github.com/m4tx.png","language":"Rust","funding_links":[],"categories":[],"sub_categories":[],"readme":"idencomp (遺伝コンプレッサー)\n=============================\n\n[![Build Status](https://github.com/m4tx/idencomp/workflows/Rust%20CI/badge.svg)](https://github.com/m4tx/idencomp/actions)\n[![MIT licensed](https://img.shields.io/badge/license-MIT-blue.svg)](https://github.com/m4tx/idencomp/blob/master/LICENSE)\n[![codecov](https://codecov.io/gh/m4tx/idencomp/branch/master/graph/badge.svg?token=6YWGUVOZH4)](https://codecov.io/gh/m4tx/idencomp)\n\nidencomp (jap. 遺伝コンプレッサー (idenkonpuressa) — \"genetic compressor\") is an\nattempt on building a compression tool for genetic data (precisely, for FASTQ\nfiles). The goal is beat the performance of most commonly used tools, while\nmaintaining a decent compression ratio.\n\nThis is based on several building blocks:\n\n* [context binning and k-means model clustering](https://arxiv.org/abs/2201.05028)\n* [rANS entropy coder](https://en.wikipedia.org/wiki/Asymmetric_numeral_systems#Range_variants_(rANS)_and_streaming)\n* [Deflate](https://en.wikipedia.org/wiki/Deflate) and [Brotli](https://en.wikipedia.org/wiki/Brotli) (compressing sequence names)\n\nThe compressor has been built with modern multicore CPUs in mind and can utilize\nmultiple cores/threads for all the critical parts. It contains a CLI interface\nand an accompanying Rust library.\n\n## License\n\nThe project is licensed under the [MIT license](LICENSE).\n\n## Contribution\n\nUnless you explicitly state otherwise, any contribution intentionally submitted\nfor inclusion in the project by you shall be licensed as MIT, without any\nadditional terms or conditions.\n\n## Developing\n### `pre-commit`\nWe encourage contributors to use predefined [`pre-commit`](https://pre-commit.com/)\nhooks — to install them in your local repo, make sure you have `pre-commit`\ninstalled and run:\n\n```shell\npre-commit install\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fm4tx%2Fidencomp","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fm4tx%2Fidencomp","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fm4tx%2Fidencomp/lists"}