{"id":24941401,"url":"https://github.com/marcelm/dnaio-benchmarks","last_synced_at":"2025-03-28T17:42:52.043Z","repository":{"id":42661712,"uuid":"461027429","full_name":"marcelm/dnaio-benchmarks","owner":"marcelm","description":"Benchmarks for every commit of dnaio","archived":false,"fork":false,"pushed_at":"2022-12-13T14:06:05.000Z","size":840,"stargazers_count":0,"open_issues_count":1,"forks_count":0,"subscribers_count":2,"default_branch":"main","last_synced_at":"2025-02-02T18:26:39.519Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://marcelm.github.io/dnaio-asv/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/marcelm.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2022-02-18T22:43:49.000Z","updated_at":"2022-08-05T12:03:27.000Z","dependencies_parsed_at":"2023-01-28T12:47:00.794Z","dependency_job_id":null,"html_url":"https://github.com/marcelm/dnaio-benchmarks","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/marcelm%2Fdnaio-benchmarks","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/marcelm%2Fdnaio-benchmarks/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/marcelm%2Fdnaio-benchmarks/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/marcelm%2Fdnaio-benchmarks/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/marcelm","download_url":"https://codeload.github.com/marcelm/dnaio-benchmarks/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":246072212,"owners_count":20719272,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-02-02T18:22:48.445Z","updated_at":"2025-03-28T17:42:52.024Z","avatar_url":"https://github.com/marcelm.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Benchmark results\n\n[Benchmarks](https://marcelm.github.io/dnaio-benchmarks/) for [dnaio](https://github.com/marcelm/dnaio)\n\n# Download benchmarking datasets\n\n    conda create -n sratools sra-tools\n    cd data\n    ./download.sh\n\n# Airspeed Velocity (asv)\n\nSome benchmarks are run using [airspeed velocity](http://github.com/airspeed-velocity/asv/).\nThey are currently run manually on a rented virtual machine somewhere on the internet,\nso the measurements are not as reliable as they would be on a dedicated machine.\n\n    python3 -m venv .venv\n    source .venv/bin/activate\n    pip install asv\n\nTo run this, the benchmarking datasets need to be downloaded first. Ensure you have `fastq-dump` available, then run `cd data \u0026\u0026 ./download.sh` to do so.\n\nRun benchmarks with:\n\n    asv run -k\n\nPublish:\n\n    asv gh-pages\n\n\n# Running library comparisons\n\nEnsure benchmark data was downloaded as described above.\n\n    conda create -n dnaio-benchmarks python sra-tools\n    conda activate dnaio-benchmarks\n    grep '^# pip install' comparelibs.py | cut -c15- | xargs pip install  # This is the worst way to do it\n    python ./comparelibs.py\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmarcelm%2Fdnaio-benchmarks","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmarcelm%2Fdnaio-benchmarks","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmarcelm%2Fdnaio-benchmarks/lists"}