{"id":13774500,"url":"https://github.com/markrobinsonuzh/conquer","last_synced_at":"2026-02-07T02:02:32.802Z","repository":{"id":79790629,"uuid":"63949425","full_name":"markrobinsonuzh/conquer","owner":"markrobinsonuzh","description":"consistent quantification of external RNA-seq data sets","archived":false,"fork":false,"pushed_at":"2023-12-21T06:04:59.000Z","size":2563,"stargazers_count":54,"open_issues_count":0,"forks_count":14,"subscribers_count":6,"default_branch":"master","last_synced_at":"2024-03-15T19:10:12.873Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"HTML","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/markrobinsonuzh.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"License.md","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null}},"created_at":"2016-07-22T11:47:31.000Z","updated_at":"2023-12-21T06:05:03.000Z","dependencies_parsed_at":"2024-01-13T12:22:01.557Z","dependency_job_id":"edda810b-4bd4-4fe5-9a1c-bdfe71cf8fef","html_url":"https://github.com/markrobinsonuzh/conquer","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/markrobinsonuzh%2Fconquer","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/markrobinsonuzh%2Fconquer/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/markrobinsonuzh%2Fconquer/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/markrobinsonuzh%2Fconquer/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/markrobinsonuzh","download_url":"https://codeload.github.com/markrobinsonuzh/conquer/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":239221278,"owners_count":19602378,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-08-03T17:01:27.337Z","updated_at":"2026-02-07T02:02:32.778Z","avatar_url":"https://github.com/markrobinsonuzh.png","language":"HTML","readme":"# conquer\n\nThis repository contains the code used to prepare the *conquer* (**con**sistent **qu**antification of **e**xternal **R**NA-seq data sets) repository, which provides access to consistently processed, analysis-ready single-cell RNA-seq data sets, together with quality control and exploratory analysis reports to help the user determine whether a particular data set fits their purposes. \n\nThe repository is available at [http://imlspenticton.uzh.ch:3838/conquer/](http://imlspenticton.uzh.ch:3838/conquer/). A more detailed description of the workflow that was used to process the data is available in the publication listed below, within the application (see the \"About\" tab), and [here](shiny-download/about_conquer.md).\n\nIf you use *conquer*, please cite\n\n* C Soneson \u0026 MD Robinson: [Bias, robustness and scalability in single-cell differential expression analysis](https://www.nature.com/articles/nmeth.4612). Nature Methods (2018).\n\n## Adapters\n\nIn cases where adapter trimming was necessary, we used a fasta file with adapters obtained from [https://github.com/csf-ngs/fastqc/blob/master/Contaminants/contaminant_list.txt](https://github.com/csf-ngs/fastqc/blob/master/Contaminants/contaminant_list.txt) (downloaded on July 25, 2016).\n\n## Contact\n\nIf you have questions or comments about *conquer*, please contact [Charlotte Soneson](mailto:charlotte.soneson@uzh.ch) or [Mark D Robinson](mailto:mark.robinson@mls.uzh.ch).\n","funding_links":[],"categories":["Single Cell"],"sub_categories":["scRNA Differential Gene Expression"],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmarkrobinsonuzh%2Fconquer","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmarkrobinsonuzh%2Fconquer","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmarkrobinsonuzh%2Fconquer/lists"}