{"id":30188002,"url":"https://github.com/marrlab/scifai-notebooks","last_synced_at":"2025-08-12T16:12:19.846Z","repository":{"id":294435469,"uuid":"703750025","full_name":"marrlab/scifAI-notebooks","owner":"marrlab","description":null,"archived":false,"fork":false,"pushed_at":"2023-10-11T20:53:43.000Z","size":12206,"stargazers_count":0,"open_issues_count":0,"forks_count":1,"subscribers_count":4,"default_branch":"master","last_synced_at":"2025-05-20T12:47:28.894Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/marrlab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2023-10-11T20:51:52.000Z","updated_at":"2023-10-11T20:53:48.000Z","dependencies_parsed_at":"2025-05-20T12:57:30.631Z","dependency_job_id":null,"html_url":"https://github.com/marrlab/scifAI-notebooks","commit_stats":null,"previous_names":["marrlab/scifai-notebooks"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/marrlab/scifAI-notebooks","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/marrlab%2FscifAI-notebooks","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/marrlab%2FscifAI-notebooks/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/marrlab%2FscifAI-notebooks/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/marrlab%2FscifAI-notebooks/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/marrlab","download_url":"https://codeload.github.com/marrlab/scifAI-notebooks/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/marrlab%2FscifAI-notebooks/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":270093269,"owners_count":24525590,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-12T02:00:09.011Z","response_time":80,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-08-12T16:12:16.974Z","updated_at":"2025-08-12T16:12:19.817Z","avatar_url":"https://github.com/marrlab.png","language":"Jupyter Notebook","funding_links":[],"categories":[],"sub_categories":[],"readme":"# scifAI-notebooks\r\n\r\nHere, we present scifAI-notebooks which are used to analyze the synapse formation data including feature extraction, statistical analysis and machine learning methods. Each folder includes a jupyter notebook that is used for creation of the figures for the manuscript.\r\n\r\nNote: this repository only includes the jupyter notebooks on the synapse formation data (to be published). For following on how this scifAI package is works, please refer to https://github.com/marrlab/scifAI\r\n\r\n# How to cite this work\r\n\r\nTo cite this work, you would need to cite the preprint and the dataset:\r\n\r\npreprint:\r\nscifAI: Explainable machine learning for profiling the immunological synapse and functional characterization of therapeutic antibodies\r\nSayedali Shetab Boushehri, Katharina Essig, Nikolaos-Kosmas Chlis, Sylvia Herter, Marina Bacac, Fabian J Theis, Elke Glasmacher, Carsten Marr, Fabian Schmich\r\nbioRxiv 2022.10.24.513494; doi: https://doi.org/10.1101/2022.10.24.513494\r\n\r\ndataset:\r\nEssig, Katharina et al. (2022), An imaging flow cytometry dataset for profiling the immunological synapse of therapeutic antibodies, Dryad, Dataset, https://doi.org/10.5061/dryad.ht76hdrk7\r\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmarrlab%2Fscifai-notebooks","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmarrlab%2Fscifai-notebooks","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmarrlab%2Fscifai-notebooks/lists"}