{"id":23886220,"url":"https://github.com/martibosch/cookiecutter-data-snake","last_synced_at":"2025-04-10T01:23:49.507Z","repository":{"id":106566170,"uuid":"516359512","full_name":"martibosch/cookiecutter-data-snake","owner":"martibosch","description":"Reproducible data science template using Python, snakemake, mamba and more :snake:","archived":false,"fork":false,"pushed_at":"2024-06-10T23:10:00.000Z","size":231,"stargazers_count":2,"open_issues_count":4,"forks_count":1,"subscribers_count":3,"default_branch":"main","last_synced_at":"2024-06-11T16:30:23.236Z","etag":null,"topics":["cookiecutter","data-science","open-science","python","reproducible-science"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/martibosch.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2022-07-21T12:20:04.000Z","updated_at":"2024-06-17T07:41:45.741Z","dependencies_parsed_at":"2023-07-20T02:01:19.365Z","dependency_job_id":"452ce214-d3d6-465f-a226-9dc29ec6a45b","html_url":"https://github.com/martibosch/cookiecutter-data-snake","commit_stats":{"total_commits":47,"total_committers":4,"mean_commits":11.75,"dds":"0.12765957446808507","last_synced_commit":"c14949cc4649e0e3770e0571fa3fcb712faa3ff4"},"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/martibosch%2Fcookiecutter-data-snake","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/martibosch%2Fcookiecutter-data-snake/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/martibosch%2Fcookiecutter-data-snake/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/martibosch%2Fcookiecutter-data-snake/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/martibosch","download_url":"https://codeload.github.com/martibosch/cookiecutter-data-snake/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":248138742,"owners_count":21053938,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["cookiecutter","data-science","open-science","python","reproducible-science"],"created_at":"2025-01-04T05:57:12.555Z","updated_at":"2025-04-10T01:23:49.474Z","avatar_url":"https://github.com/martibosch.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"[![pre-commit.ci status](https://results.pre-commit.ci/badge/github/martibosch/cookiecutter-data-snake/main.svg)](https://results.pre-commit.ci/latest/github/martibosch/cookiecutter-data-snake/main)\n![tests](https://github.com/martibosch/cookiecutter-data-snake/actions/workflows/tests.yaml/badge.svg)\n[![GitHub license](https://img.shields.io/github/license/martibosch/cookiecutter-data-snake.svg)](https://github.com/martibosch/cookiecutter-data-snake/blob/main/LICENSE)\n\n# Cookiecutter Data Snake\n\nA reproducible data science template using a bunch of snakes :snake:, i.e., Python, snakemake, mamba, and more.\n\n![skeptical snake](https://raw.githubusercontent.com/martibosch/cookiecutter-data-snake/main/data-snake.png \"skeptical snake\")\n\nThis cookiecutter is based on [`cookiecutter-data-science`](http://drivendata.github.io/cookiecutter-data-science/), with the following main differences:\n\n- [snakemake](https://snakemake.github.io) to orchestrate the data analysis workflow instead of [GNU Make](https://www.gnu.org/software/make) ([recommended in `cookiecutter-data-science`](https://drivendata.github.io/cookiecutter-data-science/)). The advantages of snakemake are its more Pythonic syntax as well as the availability of a dedicated code formatter, i.e., [snakefmt](https://github.com/snakemake/snakefmt) (see pre-commit item below).\n- [mamba](https://github.com/mamba-org/mamba) as a package manager, which provides a CLI that is almost identical to [conda](https://conda.io) but _(much) faster_.\n- [pre-commit](https://pre-commit.com) to manage multi-language pre-commit hooks, including: [ruff](https://github.com/astral-sh/ruff) to format and lint Python files (`.py`), [nbstripout](https://github.com/kynan/nbstripout) and [nbQA](https://nbqa.readthedocs.io) to format and lint Jupyter Notebooks (`.ipynb`); [snakefmt](https://github.com/snakemake/snakefmt) to format Snakefiles and more.\n\n## Requirements to use the cookiecutter template:\n\n- Python 3.8+\n- [cookiecutter](http://cookiecutter.readthedocs.org), which can be installed with pip, conda or mamba (see [the official installation instructions](https://cookiecutter.readthedocs.org/en/latest/installation.html)).\n- [mamba](https://github.com/mamba-org/mamba), which can be installed using conda or [mambaforge](https://github.com/conda-forge/miniforge#mambaforge) (see [the official installation instructions](https://github.com/mamba-org/mamba#installation))\n\n## To start a new project, run:\n\n```bash\n$ cookiecutter gh:martibosch/cookiecutter-data-snake\n```\n\nfill the required parameters and then follow the instructions in the generated `README.md` file.\n\n## Acknowledgments\n\n- Project based on [Henk Griffioen's version](https://github.com/hgrif/cookiecutter-ds-python) of the [cookiecutter data science project template](https://drivendata.github.io/cookiecutter-data-science). #cookiecutterdatascience\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmartibosch%2Fcookiecutter-data-snake","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmartibosch%2Fcookiecutter-data-snake","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmartibosch%2Fcookiecutter-data-snake/lists"}