{"id":37702234,"url":"https://github.com/masilab/deep_fixel","last_synced_at":"2026-01-16T13:01:12.088Z","repository":{"id":281243846,"uuid":"942177936","full_name":"MASILab/deep_fixel","owner":"MASILab","description":"DeepFixel: Deep learning-based identification of crossing fiber bundle elements","archived":false,"fork":false,"pushed_at":"2025-04-24T18:40:43.000Z","size":88,"stargazers_count":0,"open_issues_count":0,"forks_count":2,"subscribers_count":2,"default_branch":"main","last_synced_at":"2025-04-24T19:38:59.456Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/MASILab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2025-03-03T17:42:24.000Z","updated_at":"2025-04-24T18:40:46.000Z","dependencies_parsed_at":"2025-04-24T19:30:36.804Z","dependency_job_id":"2fa7d972-6ddb-40a6-a6f1-41f5b4bfdb7f","html_url":"https://github.com/MASILab/deep_fixel","commit_stats":null,"previous_names":["masilab/deep_fixel"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/MASILab/deep_fixel","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MASILab%2Fdeep_fixel","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MASILab%2Fdeep_fixel/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MASILab%2Fdeep_fixel/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MASILab%2Fdeep_fixel/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/MASILab","download_url":"https://codeload.github.com/MASILab/deep_fixel/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MASILab%2Fdeep_fixel/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":28478886,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-01-16T11:59:17.896Z","status":"ssl_error","status_checked_at":"2026-01-16T11:55:55.838Z","response_time":107,"last_error":"SSL_read: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2026-01-16T13:01:11.915Z","updated_at":"2026-01-16T13:01:12.061Z","avatar_url":"https://github.com/MASILab.png","language":"Python","readme":"# DeepFixel\nDeep learning-based identification of crossing fiber bundle elements\n\n## Training and testing the model\nYou can set up an environment using [`uv`](https://github.com/astral-sh/uv) by running the following command:\n```bash\nuv sync\n```\n\nTo run the model, download the weights and testing dataset from the following link: [https://zenodo.org/records/16587458](https://zenodo.org/records/16587458).\n\n- Unzip and copy the testing data to `./test_data`\n- Put the weights in `./models/pretrained`\n\nSee `run_pretrained_deep_fixel.py` to test the pretrained model and `run_deep_fixel.py` to train and test a new model.\n\n## Using the model\nIf you wish to apply the model to your own dataset, you can use `fissile.test_mesh_model()` as a basis for your code. You can also use `fissile.dataset.GeneratedMeshNIFTIDataset()` if your data is stored as spherical harmonic coefficients in a NIFTI file.","funding_links":[],"categories":[],"sub_categories":[],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmasilab%2Fdeep_fixel","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmasilab%2Fdeep_fixel","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmasilab%2Fdeep_fixel/lists"}