{"id":25016663,"url":"https://github.com/mateusjssilva/smith-waterman-algorithm","last_synced_at":"2025-03-30T07:43:11.622Z","repository":{"id":175308838,"uuid":"633850026","full_name":"MateusjsSilva/smith-waterman-algorithm","owner":"MateusjsSilva","description":"This project is a Java implementation of the Smith-Waterman algorithm, commonly used in bioinformatics for local sequence alignment. It enables the comparison of DNA, RNA, or protein sequences by identifying regions of similarity, which can be helpful for evolutionary studies, structural analysis, and functional predictions.","archived":false,"fork":false,"pushed_at":"2024-08-17T12:19:42.000Z","size":8,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-02-05T09:54:02.150Z","etag":null,"topics":["algorithm","bioinformatics","java","smith-waterman"],"latest_commit_sha":null,"homepage":"","language":"Java","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/MateusjsSilva.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2023-04-28T12:29:08.000Z","updated_at":"2024-11-05T19:24:13.000Z","dependencies_parsed_at":"2023-07-05T12:46:20.840Z","dependency_job_id":null,"html_url":"https://github.com/MateusjsSilva/smith-waterman-algorithm","commit_stats":null,"previous_names":["mateusjssilva/algoritmo-de-smith-waterman"],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MateusjsSilva%2Fsmith-waterman-algorithm","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MateusjsSilva%2Fsmith-waterman-algorithm/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MateusjsSilva%2Fsmith-waterman-algorithm/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MateusjsSilva%2Fsmith-waterman-algorithm/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/MateusjsSilva","download_url":"https://codeload.github.com/MateusjsSilva/smith-waterman-algorithm/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":246290581,"owners_count":20753724,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["algorithm","bioinformatics","java","smith-waterman"],"created_at":"2025-02-05T09:54:05.813Z","updated_at":"2025-03-30T07:43:11.598Z","avatar_url":"https://github.com/MateusjsSilva.png","language":"Java","readme":"# Smith-Waterman Algorithm\n\nThis project implements the Smith-Waterman algorithm used for local alignment of DNA sequences.\n\n## Features\n\n- Reads sequences from an input file.\n- Calculates the optimal alignment and the maximum score.\n- Writes the aligned sequences and additional information to an output file.\n\n## Project Structure\n\n```\nalgoritmo-de-smith-waterman\n└── SmithWaterman\n    └── src\n        └── mateussilva\n            └── main\n                └── java\n```\n\nThe source code is located in the `mateussilva/main/java` folder.\n\n## Requirements\n\n- Java (JDK 8 or higher)\n","funding_links":[],"categories":[],"sub_categories":[],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmateusjssilva%2Fsmith-waterman-algorithm","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmateusjssilva%2Fsmith-waterman-algorithm","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmateusjssilva%2Fsmith-waterman-algorithm/lists"}