{"id":20949664,"url":"https://github.com/matsunagalab/colabbtr","last_synced_at":"2025-10-13T04:39:11.699Z","repository":{"id":217638108,"uuid":"744405347","full_name":"matsunagalab/ColabBTR","owner":"matsunagalab","description":"End-to-end differentiable blind tip reconstruction on Colab implemented with PyTorch","archived":false,"fork":false,"pushed_at":"2024-11-15T06:23:09.000Z","size":16608,"stargazers_count":2,"open_issues_count":0,"forks_count":2,"subscribers_count":1,"default_branch":"main","last_synced_at":"2024-11-15T07:23:46.938Z","etag":null,"topics":["afm","atomic-force-microscopy","blind-tip-reconstruction","differentiable-programming"],"latest_commit_sha":null,"homepage":"","language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/matsunagalab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-01-17T08:29:26.000Z","updated_at":"2024-11-15T06:23:13.000Z","dependencies_parsed_at":"2024-02-03T08:22:49.041Z","dependency_job_id":"ac8f1e27-05cf-4100-9bfc-3943e650f280","html_url":"https://github.com/matsunagalab/ColabBTR","commit_stats":null,"previous_names":["matsunagalab/colabbtr"],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/matsunagalab%2FColabBTR","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/matsunagalab%2FColabBTR/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/matsunagalab%2FColabBTR/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/matsunagalab%2FColabBTR/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/matsunagalab","download_url":"https://codeload.github.com/matsunagalab/ColabBTR/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":225274582,"owners_count":17448296,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["afm","atomic-force-microscopy","blind-tip-reconstruction","differentiable-programming"],"created_at":"2024-11-19T00:41:36.678Z","updated_at":"2025-10-13T04:39:06.675Z","avatar_url":"https://github.com/matsunagalab.png","language":"Jupyter Notebook","funding_links":[],"categories":[],"sub_categories":[],"readme":"# ColabBTR\nEnd-to-end differentiable blind tip reconstruction on Colab implemented by PyTorch\n\n## Colab notebook\nEasy to use notebook for using the end-to-end differentiable blind tip reconstruction.\n\n[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/matsunagalab/ColabBTR/blob/main/ColabBTR.ipynb)\n\n## Module installation\nRequires `PyTorch` and `tqdm`. \n\nIf you need the module, install it directly from GitHub:\n```\npip install git+https://github.com/matsunagalab/ColabBTR\n```\n\nExample pseudo-AFM file is given in `data/`. Please try it if you do not have any AFM data for analysis.\n\n## Citation information\n```\nY. Matsunaga, S. Fuchigami, T. Ogane, and S. Takada. \nEnd-to-end differentiable blind tip reconstruction for noisy atomic force microscopy images. \nSci. Rep. 13, 129 (2023). \nhttps://doi.org/10.1038/s41598-022-27057-2\n```\n\n## Contact\nIf you have any questions or troubles, feel free to create GitHub issues, or send email to us.\n\nYasuhiro Matsunaga\n\nymatsunaga@mail.saitama-u.ac.jp\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmatsunagalab%2Fcolabbtr","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmatsunagalab%2Fcolabbtr","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmatsunagalab%2Fcolabbtr/lists"}