{"id":19221702,"url":"https://github.com/matthiaskoenig/sbmlsim","last_synced_at":"2025-02-23T09:40:50.487Z","repository":{"id":40413329,"uuid":"212321477","full_name":"matthiaskoenig/sbmlsim","owner":"matthiaskoenig","description":"sbmlsim: SBML simulation made easy","archived":false,"fork":false,"pushed_at":"2025-01-31T11:23:04.000Z","size":63847,"stargazers_count":5,"open_issues_count":50,"forks_count":4,"subscribers_count":4,"default_branch":"develop","last_synced_at":"2025-01-31T11:28:29.087Z","etag":null,"topics":["sbml","sbml-simulation"],"latest_commit_sha":null,"homepage":"","language":"HTML","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"lgpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/matthiaskoenig.png","metadata":{"files":{"readme":"README.rst","changelog":null,"contributing":".github/CONTRIBUTING.rst","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":".github/SUPPORT.rst","governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2019-10-02T11:24:50.000Z","updated_at":"2023-11-08T18:43:01.000Z","dependencies_parsed_at":"2024-06-24T10:11:43.942Z","dependency_job_id":null,"html_url":"https://github.com/matthiaskoenig/sbmlsim","commit_stats":{"total_commits":785,"total_committers":3,"mean_commits":261.6666666666667,"dds":0.003821656050955413,"last_synced_commit":"b111c6310436de4240695f682874bd48895cd1a1"},"previous_names":[],"tags_count":17,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/matthiaskoenig%2Fsbmlsim","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/matthiaskoenig%2Fsbmlsim/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/matthiaskoenig%2Fsbmlsim/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/matthiaskoenig%2Fsbmlsim/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/matthiaskoenig","download_url":"https://codeload.github.com/matthiaskoenig/sbmlsim/tar.gz/refs/heads/develop","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":240298393,"owners_count":19779280,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["sbml","sbml-simulation"],"created_at":"2024-11-09T14:43:56.011Z","updated_at":"2025-02-23T09:40:50.436Z","avatar_url":"https://github.com/matthiaskoenig.png","language":"HTML","funding_links":[],"categories":[],"sub_categories":[],"readme":".. image:: https://github.com/matthiaskoenig/sbmlsim/raw/develop/docs/images/favicon/sbmlsim-100x100-300dpi.png\n   :align: left\n   :alt: pymetadata logo\n\n\nsbmlsim: SBML simulation made easy\n==================================\n\n.. image:: https://github.com/matthiaskoenig/sbmlsim/workflows/CI-CD/badge.svg\n   :target: https://github.com/matthiaskoenig/sbmlsim/workflows/CI-CD\n   :alt: GitHub Actions CI/CD Status\n\n.. image:: https://img.shields.io/pypi/v/sbmlsim.svg\n   :target: https://pypi.org/project/sbmlsim/\n   :alt: Current PyPI Version\n\n.. image:: https://img.shields.io/pypi/pyversions/sbmlsim.svg\n   :target: https://pypi.org/project/sbmlsim/\n   :alt: Supported Python Versions\n\n.. image:: https://img.shields.io/pypi/l/sbmlsim.svg\n   :target: http://opensource.org/licenses/LGPL-3.0\n   :alt: GNU Lesser General Public License 3\n\n.. image:: https://codecov.io/gh/matthiaskoenig/sbmlsim/branch/develop/graph/badge.svg\n   :target: https://codecov.io/gh/matthiaskoenig/sbmlsim\n   :alt: Codecov\n\n.. image:: https://readthedocs.org/projects/sbmlsim/badge/?version=latest\n   :target: https://sbmlsim.readthedocs.io/en/latest/?badge=latest\n   :alt: Documentation Status\n\n.. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.3597770.svg\n   :target: https://doi.org/10.5281/zenodo.3597770\n   :alt: Zenodo DOI\n\n.. image:: https://img.shields.io/badge/code%20style-black-000000.svg\n   :target: https://github.com/ambv/black\n   :alt: Black\n\n\nsbmlsim is a collection of python utilities to simplify simulations with\n`SBML \u003chttp://www.sbml.org\u003e`__ models implemented on top of\n`roadrunner \u003chttp://libroadrunner.org/\u003e`__. Source code is available from\n`https://github.com/matthiaskoenig/sbmlsim \u003chttps://github.com/matthiaskoenig/sbmlsim\u003e`__.\n\nFeatures include among others\n\n-  simulation experiments\n-  simulation reports\n-  parameter fitting\n\nThe documentation is available on `https://sbmlsim.readthedocs.io \u003chttps://sbmlsim.readthedocs.io\u003e`__.\nIf you have any questions or issues please `open an issue \u003chttps://github.com/matthiaskoenig/sbmlsim/issues\u003e`__.\n\n\nHow to cite\n===========\n\n.. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.3597770.svg\n   :target: https://doi.org/10.5281/zenodo.3597770\n   :alt: Zenodo DOI\n\nContributing\n============\n\nContributions are always welcome! Please read the `contributing guidelines\n\u003chttps://github.com/matthiaskoenig/sbmlsim/blob/develop/.github/CONTRIBUTING.rst\u003e`__ to\nget started.\n\nLicense\n=======\n\n* Source Code: `LGPLv3 \u003chttp://opensource.org/licenses/LGPL-3.0\u003e`__\n* Documentation: `CC BY-SA 4.0 \u003chttp://creativecommons.org/licenses/by-sa/4.0/\u003e`__\n\nThe sbmlsim source is released under both the GPL and LGPL licenses version 2 or\nlater. You may choose which license you choose to use the software under.\n\nThis program is free software: you can redistribute it and/or modify it under\nthe terms of the GNU General Public License or the GNU Lesser General Public\nLicense as published by the Free Software Foundation, either version 2 of the\nLicense, or (at your option) any later version.\n\nThis program is distributed in the hope that it will be useful, but WITHOUT ANY\nWARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A\nPARTICULAR PURPOSE. See the GNU General Public License for more details.\n\nFunding\n=======\nMatthias König is supported by the Federal Ministry of Education and Research (BMBF, Germany)\nwithin the research network Systems Medicine of the Liver (**LiSyM**, grant number 031L0054) \nand by the German Research Foundation (DFG) within the Research Unit Programme FOR 5151 \n\"`QuaLiPerF \u003chttps://qualiperf.de\u003e`__ (Quantifying Liver Perfusion-Function Relationship in Complex Resection - \nA Systems Medicine Approach)\" by grant number 436883643 and by grant number \n465194077 (Priority Programme SPP 2311, Subproject SimLivA). Matthias König has received funding from the EOSCsecretariat.eu which has received funding \nfrom the European Union's Horizon Programme call H2020-INFRAEOSC-05-2018-2019, grant Agreement number 831644.\n\n\nInstallation\n============\n``sbmlsim`` is available from `pypi \u003chttps://pypi.python.org/pypi/sbmlsim\u003e`__ and\ncan be installed via::\n\n    pip install sbmlsim\n\nRequirements\n------------\n\nHDF5 support is required which can be installed on linux via::\n\n    sudo apt-get install -y libhdf5-serial-dev\n\nDevelop version\n---------------\nThe latest develop version can be installed via::\n\n    pip install git+https://github.com/matthiaskoenig/sbmlsim.git@develop\n\nOr via cloning the repository and installing via::\n\n    git clone https://github.com/matthiaskoenig/sbmlsim.git\n    cd sbmlsim\n    pip install -e .\n\nTo install for development use::\n\n    pip install -e .[development]\n    \n© 2019-2022 Matthias König\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmatthiaskoenig%2Fsbmlsim","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmatthiaskoenig%2Fsbmlsim","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmatthiaskoenig%2Fsbmlsim/lists"}