{"id":19221750,"url":"https://github.com/matthiaskoenig/sbmlutils","last_synced_at":"2025-04-06T06:07:15.146Z","repository":{"id":7688092,"uuid":"55952847","full_name":"matthiaskoenig/sbmlutils","owner":"matthiaskoenig","description":"Python utilities for 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image:: https://github.com/matthiaskoenig/sbmlutils/raw/develop/docs_builder/images/sbmlutils-logo-60.png\n   :align: left\n   :alt: sbmlutils logo\n\nsbmlutils: python utilities for SBML\n====================================\n|icon1| |icon2| |icon3| |icon4| |icon5| |icon6| |icon7| |icon8| |icon9|\n\n.. |icon1| image:: https://github.com/matthiaskoenig/sbmlutils/workflows/CI-CD/badge.svg\n   :target: https://github.com/matthiaskoenig/sbmlutils/workflows/CI-CD\n   :alt: GitHub Actions CI/CD Status\n\n.. |icon2| image:: https://img.shields.io/pypi/v/sbmlutils.svg\n   :target: https://pypi.org/project/sbmlutils/\n   :alt: Current PyPI Version\n\n.. |icon3| image:: https://img.shields.io/pypi/pyversions/sbmlutils.svg\n   :target: https://pypi.org/project/sbmlutils/\n   :alt: Supported Python Versions\n\n.. |icon4| image:: https://img.shields.io/pypi/l/sbmlutils.svg\n   :target: http://opensource.org/licenses/LGPL-3.0\n   :alt: GNU Lesser General Public License 3\n\n.. |icon5| image:: https://codecov.io/gh/matthiaskoenig/sbmlutils/branch/develop/graph/badge.svg\n   :target: https://codecov.io/gh/matthiaskoenig/sbmlutils\n   :alt: Codecov\n\n.. |icon6| image:: https://readthedocs.org/projects/sbmlutils/badge/?version=latest\n   :target: https://sbmlutils.readthedocs.io/en/latest/?badge=latest\n   :alt: Documentation Status\n\n.. |icon7| image:: https://zenodo.org/badge/55952847.svg\n   :target: https://zenodo.org/badge/latestdoi/55952847\n   :alt: Zenodo DOI\n\n.. |icon8| image:: https://img.shields.io/badge/code%20style-black-000000.svg\n   :target: https://github.com/ambv/black\n   :alt: Black\n\n.. |icon9| image:: http://www.mypy-lang.org/static/mypy_badge.svg\n   :target: http://mypy-lang.org/\n   :alt: mypy\n\nsbmlutils is a collection of python utilities for working with\n`SBML \u003chttp://www.sbml.org\u003e`__ models implemented on top of\n`libsbml \u003chttp://sbml.org/Software/libSBML\u003e`__ and other libraries\nwith source code available from `https://github.com/matthiaskoenig/sbmlutils \u003chttps://github.com/matthiaskoenig/sbmlutils\u003e`__.\n\nFeatures include among others\n\n-  helper functions for model creation, manipulation, and annotation\n-  HTML reports of SBML models `https://sbml4humans.de \u003chttps://sbml4humans.de\u003e`__.\n-  file converters (XPP)\n\nThe documentation is available on `https://sbmlutils.readthedocs.io \u003chttps://sbmlutils.readthedocs.io\u003e`__. \nIf you have any questions or issues please `open an issue \u003chttps://github.com/matthiaskoenig/sbmlutils/issues\u003e`__.\n\n.. image:: docs/presentations/reproducibility_center_2021/screenshot.png\n   :target: https://youtu.be/SxIq8qeXxD0?t=1261\n   :alt: sbmlutils introduction\n   :height: 200px\n\nHow to cite\n===========\n.. image:: https://zenodo.org/badge/55952847.svg\n   :target: https://zenodo.org/badge/latestdoi/55952847\n   :alt: Zenodo DOI\n\nContributing\n============\n\nContributions are always welcome! Please read the `contributing guidelines\n\u003chttps://github.com/matthiaskoenig/sbmlutils/blob/develop/.github/CONTRIBUTING.rst\u003e`__ to\nget started.\n\nLicense\n=======\n\n* Source Code: `LGPLv3 \u003chttp://opensource.org/licenses/LGPL-3.0\u003e`__\n* Documentation: `CC BY-SA 4.0 \u003chttp://creativecommons.org/licenses/by-sa/4.0/\u003e`__\n\nThe sbmlutils source is released under both the GPL and LGPL licenses version 2 or\nlater. You may choose which license you choose to use the software under.\n\nThis program is free software: you can redistribute it and/or modify it under\nthe terms of the GNU General Public License or the GNU Lesser General Public\nLicense as published by the Free Software Foundation, either version 2 of the\nLicense, or (at your option) any later version.\n\nThis program is distributed in the hope that it will be useful, but WITHOUT ANY\nWARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A\nPARTICULAR PURPOSE. See the GNU General Public License for more details.\n\nFunding\n=======\nMatthias König is supported by the Federal Ministry of Education and Research (BMBF, Germany)\nwithin the research network Systems Medicine of the Liver (**LiSyM**, grant number 031L0054) \nand by the German Research Foundation (DFG) within the Research Unit Programme FOR 5151 \n\"`QuaLiPerF \u003chttps://qualiperf.de\u003e`__ (Quantifying Liver Perfusion-Function Relationship in Complex Resection - \nA Systems Medicine Approach)\" by grant number 436883643 and by grant number \n465194077 (Priority Programme SPP 2311, Subproject SimLivA).\nSBML4Humans was funded as part of `Google Summer of Code 2021 \u003chttps://summerofcode.withgoogle.com/\u003e`__.\nMatthias König has received funding from the EOSCsecretariat.eu which has received funding \nfrom the European Union's Horizon Programme call H2020-INFRAEOSC-05-2018-2019, grant Agreement number 831644.\n\nInstallation\n============\n`sbmlutils` is available from `pypi \u003chttps://pypi.python.org/pypi/sbmlutils\u003e`__ and \ncan be installed via:: \n\n    pip install sbmlutils\n\nRequirements\n------------\n`tkinter` is required which can be installed on linux via::\n\n    apt-get install python-tk\n    apt-get install python3-tk\n\nPlease see the respective installation instructions for your operating system.\n\nDevelop version\n---------------\nThe latest develop version can be installed via::\n\n    pip install git+https://github.com/matthiaskoenig/sbmlutils.git@develop\n\nOr via cloning the repository and installing via::\n\n    git clone https://github.com/matthiaskoenig/sbmlutils.git\n    cd sbmlutils\n    pip install -e .\n\nTo install for development use::\n\n    pip install -e .[development]\n\n© 2017-2024 Matthias König\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmatthiaskoenig%2Fsbmlutils","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmatthiaskoenig%2Fsbmlutils","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmatthiaskoenig%2Fsbmlutils/lists"}