{"id":19557973,"url":"https://github.com/mbjoseph/secmr","last_synced_at":"2026-06-09T22:31:16.820Z","repository":{"id":149590612,"uuid":"232949552","full_name":"mbjoseph/secmr","owner":"mbjoseph","description":"A research compendium for: “Using visual encounter data to improve capture-recapture abundance estimates”","archived":false,"fork":false,"pushed_at":"2021-01-25T21:53:00.000Z","size":424,"stargazers_count":1,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"master","last_synced_at":"2025-11-19T22:04:09.737Z","etag":null,"topics":["bayesian","capture-recapture","ecology","research-compendium","statistics"],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/mbjoseph.png","metadata":{"files":{"readme":"README.Rmd","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2020-01-10T02:34:31.000Z","updated_at":"2025-06-22T10:22:40.000Z","dependencies_parsed_at":null,"dependency_job_id":"78efd41d-6be9-4dfe-ab76-417faeb805fe","html_url":"https://github.com/mbjoseph/secmr","commit_stats":{"total_commits":17,"total_committers":1,"mean_commits":17.0,"dds":0.0,"last_synced_commit":"43614f8559fb1b1a1b022e2d4455fd7ab4f28d87"},"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/mbjoseph/secmr","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mbjoseph%2Fsecmr","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mbjoseph%2Fsecmr/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mbjoseph%2Fsecmr/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mbjoseph%2Fsecmr/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/mbjoseph","download_url":"https://codeload.github.com/mbjoseph/secmr/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mbjoseph%2Fsecmr/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":34129072,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-05-26T15:22:16.424Z","status":"online","status_checked_at":"2026-06-09T02:00:06.510Z","response_time":63,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bayesian","capture-recapture","ecology","research-compendium","statistics"],"created_at":"2024-11-11T04:44:37.665Z","updated_at":"2026-06-09T22:31:16.799Z","avatar_url":"https://github.com/mbjoseph.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"---\noutput: github_document\n---\n\n\u003c!-- README.md is generated from README.Rmd. Please edit that file --\u003e\n\n```{r, echo = FALSE}\nknitr::opts_chunk$set(\n  collapse = TRUE,\n  comment = \"#\u003e\",\n  fig.path = \"README-\"\n)\n# Please put your title here to include it in the file below.\nTitle \u003c- \"Using encounter data to improve capture-recapture abundance estimates\"\n```\n\n# secmr\n\n## A research compendium for: \"Using encounter data to improve capture-recapture abundance estimates\"\n\n[![Travis build status](https://travis-ci.org/mbjoseph/secmr.svg?branch=master)](https://travis-ci.org/mbjoseph/secmr)\n\n\u003c!-- This repository contains the data and code for our paper: --\u003e\n\n\u003c!-- \u003e Authors, (YYYY). _`r Title`_. Name of journal/book \u003chttps://doi.org/xxx/xxx\u003e --\u003e\n\nOur pre-print is online here:\n\n\u003e Joseph MB, Knapp RA, (2020). _`r Title`_. bioRxiv, Online at \u003chttps://doi.org/xxx/xxx\u003e\n\n\n### How to cite\n\nPlease cite this compendium as:\n\n\u003e Joseph MB, Knapp RA, (`r format(Sys.Date(), \"%Y\")`). _Compendium of R code and data for `r Title`_. Accessed `r format(Sys.Date(), \"%d %b %Y\")`. Online at \u003chttps://doi.org/xxx/xxx\u003e\n\n### How to download or install\n\nYou can download the compendium as a zip from from this URL: \u003c/archive/master.zip\u003e\n\nOr you can install this compendium as an R package, secmr, from GitHub with:\n\n\n```{r gh-installation, eval = FALSE}\n# install.packages(\"remotes\")\nremotes::install_github(\"mbjoseph/secmr\")\n```\n\n\n### Licenses\n\n**Text and figures :**  [CC-BY-4.0](http://creativecommons.org/licenses/by/4.0/)\n\n**Code :** See the [DESCRIPTION](DESCRIPTION) file\n\n### Contributions\n\nWe welcome contributions from everyone. Before you get started, please see our [contributor guidelines](CONTRIBUTING.md). Please note that this project is released with a [Contributor Code of Conduct](CONDUCT.md). By participating in this project you agree to abide by its terms.\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmbjoseph%2Fsecmr","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmbjoseph%2Fsecmr","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmbjoseph%2Fsecmr/lists"}