{"id":21500815,"url":"https://github.com/mcanouil/nacho","last_synced_at":"2025-07-15T22:32:02.576Z","repository":{"id":34809963,"uuid":"177137375","full_name":"mcanouil/NACHO","owner":"mcanouil","description":"NAnostring quality Control dasHbOard","archived":false,"fork":false,"pushed_at":"2024-01-12T19:25:36.000Z","size":76757,"stargazers_count":8,"open_issues_count":0,"forks_count":4,"subscribers_count":3,"default_branch":"main","last_synced_at":"2024-11-07T23:42:59.042Z","etag":null,"topics":["mirna","mrna","nanostring","normalisation","quality-control","r-package","r-stats","rstats","shiny"],"latest_commit_sha":null,"homepage":"https://m.canouil.dev/NACHO/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/mcanouil.png","metadata":{"files":{"readme":"README.Rmd","changelog":null,"contributing":".github/CONTRIBUTING.md","funding":".github/FUNDING.yml","license":"LICENSE.md","code_of_conduct":".github/CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":".github/SUPPORT.md","governance":null,"roadmap":null,"authors":null},"funding":{"github":"mcanouil","patreon":null,"open_collective":null,"ko_fi":null,"tidelift":null,"community_bridge":null,"liberapay":null,"issuehunt":null,"otechie":null,"lfx_crowdfunding":null,"custom":null}},"created_at":"2019-03-22T12:37:13.000Z","updated_at":"2024-09-12T08:41:20.000Z","dependencies_parsed_at":"2024-01-16T14:03:51.065Z","dependency_job_id":"28a1952e-1041-463c-9248-a60702868d7f","html_url":"https://github.com/mcanouil/NACHO","commit_stats":{"total_commits":732,"total_committers":5,"mean_commits":146.4,"dds":0.02732240437158473,"last_synced_commit":"7c2b47df9c10e7d263101f20a81e017bbfefba1c"},"previous_names":[],"tags_count":29,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mcanouil%2FNACHO","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mcanouil%2FNACHO/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mcanouil%2FNACHO/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mcanouil%2FNACHO/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/mcanouil","download_url":"https://codeload.github.com/mcanouil/NACHO/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":226077541,"owners_count":17570163,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["mirna","mrna","nanostring","normalisation","quality-control","r-package","r-stats","rstats","shiny"],"created_at":"2024-11-23T17:47:47.317Z","updated_at":"2024-11-23T17:47:48.143Z","avatar_url":"https://github.com/mcanouil.png","language":"R","funding_links":["https://github.com/sponsors/mcanouil"],"categories":[],"sub_categories":[],"readme":"---\noutput: github_document\n---\n\n\u003c!-- README.md is generated from README.Rmd. Please edit that file --\u003e\n\n```{r}\n#| echo: false\nknitr::opts_chunk$set(\n  collapse = TRUE,\n  comment = \"#\u003e\",\n  fig.path = \"man/figures/README-\",\n  out.width = \"100%\"\n)\n\nif (file.exists(\"man/figures/nacho_app.mp4\")) {\n  system(\"ffmpeg -i man/figures/nacho_app.mp4 -vf fps=1 man/figures/nacho_app%04d.png\")\n  gif_app \u003c- gifski::gifski(\n    png_files = list.files(\n      path = dirname(knitr::opts_chunk$get(\"fig.path\")),\n      pattern = \"nacho_app.*.png\",\n      full.names = TRUE\n    ),\n    gif_file = paste0(knitr::opts_chunk$get(\"fig.path\"), \"nacho_app.gif\"),\n    width = 1920 * 2 / 3,\n    height = 1080 * 2 / 3,\n    delay = 0.50,\n    loop = TRUE,\n    progress = FALSE\n  )\n  unlink(list.files(\n    path = dirname(knitr::opts_chunk$get(\"fig.path\")),\n    pattern = \"nacho_app.*.png\",\n    full.names = TRUE\n  ))\n}\n\nif (file.exists(paste0(knitr::opts_chunk$get(\"fig.path\"), \"nacho_app.gif\"))) {\n  gif_app \u003c- paste0(knitr::opts_chunk$get(\"fig.path\"), \"nacho_app.gif\")\n} else {\n  gif_app \u003c- paste0(knitr::opts_chunk$get(\"fig.path\"), \"app.png\")\n}\n```\n\n# NAnostring quality Control dasHbOard \u003cimg src=\"man/figures/nacho_hex.png\" align=\"right\" width=\"120\" /\u003e\n\n\u003c!-- badges: start --\u003e\n[![Lifecycle: stable](https://img.shields.io/badge/lifecycle-stable-brightgreen.svg)](https://lifecycle.r-lib.org/articles/stages.html)\n[![GitHub tag](https://img.shields.io/github/tag/mcanouil/NACHO.svg?label=latest tag\u0026include_prereleases)](https://github.com/mcanouil/NACHO)\n[![codecov](https://codecov.io/gh/mcanouil/NACHO/branch/main/graph/badge.svg)](https://app.codecov.io/gh/mcanouil/NACHO?branch=main)\n[![R-CMD-check](https://github.com/mcanouil/NACHO/workflows/R-CMD-check/badge.svg)](https://github.com/mcanouil/NACHO/actions)\n[![CRAN_Status_Badge](https://www.r-pkg.org/badges/version-ago/NACHO)](https://cran.r-project.org/package=NACHO)\n[![cran checks_worst](https://badges.cranchecks.info/worst/NACHO.svg)](https://cran.r-project.org/web/checks/check_results_NACHO.html)\n[![CRAN_Download_total](https://cranlogs.r-pkg.org/badges/NACHO)](https://cran.r-project.org/package=NACHO)\n\u003c!-- badges: end --\u003e\n\n## Installation\n\n```{r}\n#| eval: false\n# Install NACHO from CRAN:\ninstall.packages(\"NACHO\")\n\n# Or the development version from GitHub:\n# install.packages(\"remotes\")\nremotes::install_github(\"mcanouil/NACHO\")\n```\n\n## Overview \n\n```{r}\n#| echo: false\n#| results: asis\ncat(readLines(file.path(\"inst\", \"app\", \"www\", \"about-nacho.md\"))[-c(1, 2)], sep = \"\\n\")\n```\n\n### Shiny Application ([demo](https://mcanouil.shinyapps.io/NACHO_data/))\n\n```{r}\n#| eval: false\nshiny::runApp(system.file(\"app\", package = \"NACHO\"))\n```\n```{r}\n#| echo: false\nknitr::include_graphics(sub(\".*/man\", \"man\", gif_app))\n```\n\n```{r}\n#| eval: false\nvisualise(GSE74821)\n```\n\n![](man/figures/README-visualise.png)\n\n## Citing NACHO\n\n```{r}\n#| echo: false\n#| results: asis\nprint(citation(\"NACHO\"), \"html\")\n```\n\n```{r}\n#| echo: false\n#| comment: \"\"\nprint(citation(\"NACHO\"), \"bibtex\")\n```\n\n---\n\n## Getting help\n\nIf you encounter a clear bug, please file a minimal reproducible example on [github](https://github.com/mcanouil/NACHO/issues).  \nFor questions and other discussion, please contact the package maintainer.\n\n## Code of Conduct\n\nPlease note that this project is released with a [Contributor Code of Conduct](https://contributor-covenant.org/version/2/0/CODE_OF_CONDUCT.html).  \nBy contributing to this project, you agree to abide by its terms.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmcanouil%2Fnacho","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmcanouil%2Fnacho","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmcanouil%2Fnacho/lists"}