{"id":18658710,"url":"https://github.com/mcellteam/workshop_2016","last_synced_at":"2026-01-23T06:47:19.426Z","repository":{"id":146198931,"uuid":"53088107","full_name":"mcellteam/Workshop_2016","owner":"mcellteam","description":"Repository for models, descriptions, and code to be used for the 2016 Workshop","archived":false,"fork":false,"pushed_at":"2016-06-03T14:09:30.000Z","size":5831,"stargazers_count":0,"open_issues_count":0,"forks_count":2,"subscribers_count":19,"default_branch":"master","last_synced_at":"2025-05-18T01:36:30.486Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Matlab","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/mcellteam.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2016-03-03T22:13:22.000Z","updated_at":"2016-05-19T20:39:00.000Z","dependencies_parsed_at":null,"dependency_job_id":"ef03fa62-c17a-4a2b-8a93-d1281df865fa","html_url":"https://github.com/mcellteam/Workshop_2016","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/mcellteam/Workshop_2016","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mcellteam%2FWorkshop_2016","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mcellteam%2FWorkshop_2016/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mcellteam%2FWorkshop_2016/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mcellteam%2FWorkshop_2016/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/mcellteam","download_url":"https://codeload.github.com/mcellteam/Workshop_2016/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mcellteam%2FWorkshop_2016/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":28682261,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-01-23T05:48:07.525Z","status":"ssl_error","status_checked_at":"2026-01-23T05:48:07.129Z","response_time":59,"last_error":"SSL_read: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-07T07:34:06.741Z","updated_at":"2026-01-23T06:47:19.410Z","avatar_url":"https://github.com/mcellteam.png","language":"Matlab","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Workshop 2016\n## Repository for models, descriptions, and code to be used for the 2016 Workshop.\n\nIdeally we would like the 2016 workshop to demonstrate a pipelining of our tools using a single multi-scale model. However, since many of our tools operate on different scales, it may be necessary to simplify certain aspects of the model or otherwise address the multi-scale issue so it will be manageable within the time and computational constraints of the workshop.\n\nThis repository has been created as a place to work out an appropriate model for the workshop consistent with our February 25th decision.\n\nAt this point, the candidate tools for such a joint model are:\n\n* **[CellBlender](cellblender)**\n* **[CellOrganizer](cellorganizer)**\n* **[BioNetGen](bionetgen)**\n* **[MCell](mcell)**\n\nPlease feel free to add/delete tools that might participate in this portion of the workshop.\n\nAs of March 31st, we have a preliminary model from CellOrganizer with an organelle added by CellBlender:\n\n![Cell1 in CellBlender/MCell](cellblender/Cell1_Test1.gif?raw=true \"Cell1 in CellBlender/MCell\")\n\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmcellteam%2Fworkshop_2016","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmcellteam%2Fworkshop_2016","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmcellteam%2Fworkshop_2016/lists"}