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# (Badges)\n\n| **Latest release** | [![Last release tag][lastreleasetag]][githubreleases] ![GitHub commits since latest release (by date) for a branch][commitssincerelease]  [![Documentation Status][badge_docs]][docsurl] [![Anaconda-Server Badge][badge_condaforge]][conda_url]|\n| :------            | :-------                                                                                                                                                                              |\n| **Status**         | [![GH Actions Status][badge_actions]][mainworkflow] [![codecov][badge_codecov]][codecovio]                                                                                            |\n| **Community**      | [![License: GPL v2][badge_license]][licenseinfo]    [![Powered by MDAnalysis][mdanalysis_badge]][mdaorg]                                                                              |\n\n[badge_actions]: 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https://mdanalysis.org\n[docsurl]: https://www.mdanalysis.org/mdaencore/\n\nEnsemble overlap comparison software for molecular data.\n\nmdaencore is bound by a [Code of Conduct](https://github.com/MDAnalysis/mdaencore/blob/main/CODE_OF_CONDUCT.md).\n\n### Installation\n\nTo build mdaencore from source, we highly recommend using virtual environments.\nIf possible, we strongly recommend that you use [Anaconda](https://docs.conda.io/en/latest/) as your package manager.\nBelow we provide instructions both for `conda` and for `pip`.\n\n#### With conda\n\nEnsure that you have [conda](https://docs.conda.io/projects/conda/en/latest/user-guide/install/index.html) installed.\nInstall in your preferred conda environment with\n```\nconda install -c conda-forge mdaencore\n```\n\nTo update\n```\nconda update -c conda-forge mdaencore\n```\n\n\n#### With pip\n\nTo build the package from source, run:\n\n```\npip install .\n```\n\nIf you want to create a development environment, install the dependencies required for tests and docs with:\n\n```\npip install -e \".[test,doc]\"\n```\n\n### Copyright\n\nThe mdaencore source code is hosted at https://github.com/MDAnalysis/mdaencore\nand is available under the GNU General Public License, version 2 or any later version (see the file [LICENSE](https://github.com/MDAnalysis/mdaencore/blob/main/LICENSE)).\n\nPlease note that the code is packaged and released under the terms of the [GNU General Public License, version 3](https://www.gnu.org/licenses/gpl-3.0.en.html)  or any later version.\n\nCopyright (c) 2023, mdaencore authors (see the file [AUTHORS.md](https://github.com/MDAnalysis/mdaencore/blob/release_v1.0.0/AUTHORS.md))\n\n\n#### Acknowledgements\n \nProject based on the  [MDAnalysis Cookiecutter](https://github.com/MDAnalysis/cookiecutter-mda) version 0.1.\nPlease cite [MDAnalysis](https://github.com/MDAnalysis/mdanalysis#citation) and the [ENCORE paper](https://doi.org/10.1371/journal.pcbi.1004415) when using mdaencore in published work:\n\n1. M. Tiberti, E. Papaleo, T. Bengtsen, W. Boomsma, and K. Lindorff-Larsen. ENCORE: Software for quantitative ensemble comparison. PLoS Comput Biol, 11 (2015), e1004415. doi: 10.1371/journal.pcbi.1004415\n2. R. J. Gowers, M. Linke, J. Barnoud, T. J. E. Reddy, M. N. Melo, S. L. Seyler, D. L. Dotson, J. Domanski, S. Buchoux, I. M. Kenney, and O. Beckstein. MDAnalysis: A Python package for the rapid analysis of molecular dynamics simulations. In S. Benthall and S. Rostrup, editors, Proceedings of the 15th Python in Science Conference, pages 98-105, Austin, TX, 2016. SciPy. doi:10.25080/Majora-629e541a-00e\n\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmdanalysis%2Fmdaencore","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmdanalysis%2Fmdaencore","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmdanalysis%2Fmdaencore/lists"}