{"id":18524316,"url":"https://github.com/mdanalysis/stride","last_synced_at":"2025-04-09T11:32:01.225Z","repository":{"id":23783514,"uuid":"99841954","full_name":"MDAnalysis/stride","owner":"MDAnalysis","description":"STRIDE: Protein secondary structure assignment from atomic coordinates","archived":false,"fork":false,"pushed_at":"2022-04-25T18:44:59.000Z","size":323,"stargazers_count":10,"open_issues_count":1,"forks_count":5,"subscribers_count":7,"default_branch":"master","last_synced_at":"2024-10-29T17:20:07.585Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"C","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/MDAnalysis.png","metadata":{"files":{"readme":"README.rst","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2017-08-09T18:44:55.000Z","updated_at":"2024-05-05T05:02:36.000Z","dependencies_parsed_at":"2022-07-27T04:17:16.295Z","dependency_job_id":null,"html_url":"https://github.com/MDAnalysis/stride","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MDAnalysis%2Fstride","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MDAnalysis%2Fstride/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MDAnalysis%2Fstride/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MDAnalysis%2Fstride/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/MDAnalysis","download_url":"https://codeload.github.com/MDAnalysis/stride/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":248031642,"owners_count":21036446,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-06T17:40:35.528Z","updated_at":"2025-04-09T11:32:01.203Z","avatar_url":"https://github.com/MDAnalysis.png","language":"C","funding_links":[],"categories":[],"sub_categories":[],"readme":"STRIDE: Protein secondary structure assignment from atomic coordinates\n\nAbout STRIDE:\n\nSTRIDE [1] is a program to recognize secondary structural elements  in\nproteins from  their atomic coordinates. It performs the same task as\nDSSP by Kabsch and Sander [2] but utilizes both hydrogen bond  energy\nand  mainchain  dihedral angles rather than hydrogen bonds alone. It\nrelies on database-derived recognition parameters with the\ncrystallographers' secondary structure definitions as a standard-of-\ntruth. Please see Frishman and Argos [1] for detailed description  of\nthe algorithm.\n\n 1.  Frishman,D\t\u0026 Argos,P. (1995) Knowledge-based secondary structure\n     assignment.  Proteins:  structure,\tfunction and genetics, 23,   \n     566-579.\n\n 2.  Kabsch,W. \u0026 Sander,C. (1983)  Dictionary  of  protein  secondary\n     structure:\t   pattern   recognition   of\thydrogen-bonded\t  and\n     geometrical features. Biopolymers,\t22: 2577-2637.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmdanalysis%2Fstride","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmdanalysis%2Fstride","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmdanalysis%2Fstride/lists"}