{"id":22794818,"url":"https://github.com/menchelab/marco","last_synced_at":"2025-08-04T02:07:32.907Z","repository":{"id":135233647,"uuid":"233828570","full_name":"menchelab/Marco","owner":"menchelab","description":"Code for the study conducted by Brunner et al.","archived":false,"fork":false,"pushed_at":"2020-09-29T14:33:26.000Z","size":6294,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":4,"default_branch":"master","last_synced_at":"2025-03-30T17:46:24.631Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Jupyter 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Notebook","funding_links":[],"categories":[],"sub_categories":[],"readme":"# The PI3K pathway preserves metabolic health by driving MARCO dependent lipid uptake of adipose tissue macrophages\n\n## Study authors\n\nJulia S Brunner, Andrea Vogel, Alexander Lercher, Michael Caldera, Ana Korosec, Marlene Pühringer, Melanie Hofmann, Alexander Hajto, Markus Kieler, Lucia Quemada Garrido, Martina Kerndl, Mario Kuttke, Ildiko Mesteri, Maria W Górna, Marta Kulik, Paulina M Dominiak, Amanda E Brandon, Emma Estevez, Casey L Egan, Florian Gruber, Martina Schweiger, Jörg Menche, Andreas Bergthaler, Thomas Weichhart, Kristaps Klavins, Mark A Febbraio, Omar Sharif, Gernot Schabbauer\n\nCorrespondence to: gernot.schabbauer@meduniwien.ac.at and omar.sharif@meduniwien.ac.at.\n\n## Data availability\nAll data and code needed to reproduce the analysis and plots regarding metabolomics can be found within the /data and /code folders of this github repository\n\n## Code summary\nSeveral notebooks are provided, showing the analysis presented in the paper and how the figures were generated.\n\n## Installation and system requirements\nPython packages used for analysis  \nAll code written for this program was in python 3.7.2  \n\nPython version: 3.7.2  \nPython packages included:  \nnumpy [v 1.16.0]  \nscipy [v 1.2.0]  \npandas [v 0.24.0]  \nsklearn [v 0.20.3]  \nmatplotlib [v 3.0.2]  \nstatsmodels [v 0.10.1]  \nseaborn [0.9.0]  \n\n### System requirements\nCode was written and execuded on a MacBookPro  \n\nCPU: Intel Core i5  \nMemory: 8GB  \nGraphics: Intel Iris Graphics 6100  \nMacOS: 10.14.3  \n### Installation instructions\nAll python packages should be easily being installed via pip [https://pypi.org/project/pip/]  \ne.g. pip install \u003cpackage_name\u003e  \nTypically time to install all packages should be less than 30min depending on the amount of previously installed packages.\n\n### Code execution time\nRunning all three notebooks should take less than 5min (given the same or a similar system)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmenchelab%2Fmarco","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmenchelab%2Fmarco","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmenchelab%2Fmarco/lists"}