{"id":22794804,"url":"https://github.com/menchelab/radipop","last_synced_at":"2025-03-30T17:44:07.303Z","repository":{"id":203349744,"uuid":"226286044","full_name":"menchelab/radipop","owner":"menchelab","description":"Predicting portal hypertension outcomes from abdominal CT scans","archived":false,"fork":false,"pushed_at":"2022-02-28T22:01:09.000Z","size":128223,"stargazers_count":1,"open_issues_count":0,"forks_count":1,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-02-05T20:01:56.336Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/menchelab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2019-12-06T08:54:27.000Z","updated_at":"2024-01-02T09:27:33.000Z","dependencies_parsed_at":null,"dependency_job_id":"42026bae-e410-4309-b24e-6452bc5e762f","html_url":"https://github.com/menchelab/radipop","commit_stats":null,"previous_names":["menchelab/radipop"],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/menchelab%2Fradipop","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/menchelab%2Fradipop/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/menchelab%2Fradipop/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/menchelab%2Fradipop/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/menchelab","download_url":"https://codeload.github.com/menchelab/radipop/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":246357764,"owners_count":20764361,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-12-12T04:10:28.573Z","updated_at":"2025-03-30T17:44:07.281Z","avatar_url":"https://github.com/menchelab.png","language":"Jupyter Notebook","funding_links":[],"categories":[],"sub_categories":[],"readme":"# radipop\nPredicting portal hypertension outcomes from abdominal CT scans\n\n\n## Installation/dependencies \n    #Create and activate conda environment \n    conda create --name radipop python=3.7\n    conda activate radipop \n\n    #Install dependencies \n    conda install pip \n    pip install -r requirements.txt\n    \n    \n## Usage\nTo start the graphical user interface: \n\n    python segmentation.py \n    \nThe slices (.png) and mask (.p) files must be put in the directories as follows: \n\n    #Slices (.png files) --\u003e one directory per patient, directory name (PATIENT_ID) must be integer\n    assets/niftynet_raw_images/PATIENT_ID/\n    \n    #Masks (.p files) --\u003e one directory per patient, directory name (PATIENT_ID) must be integer\n    assets/masks/PATIENT_ID/\n    \n        \n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmenchelab%2Fradipop","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmenchelab%2Fradipop","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmenchelab%2Fradipop/lists"}