{"id":20690257,"url":"https://github.com/merck/metalite.sl","last_synced_at":"2025-08-02T22:16:33.955Z","repository":{"id":231574196,"uuid":"779440169","full_name":"Merck/metalite.sl","owner":"Merck","description":"An R package designed for the analysis \u0026 reporting of subject baseline characteristics in clinical trials.","archived":false,"fork":false,"pushed_at":"2024-05-22T14:12:39.000Z","size":1542,"stargazers_count":0,"open_issues_count":4,"forks_count":0,"subscribers_count":5,"default_branch":"main","last_synced_at":"2024-05-22T14:30:01.164Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://merck.github.io/metalite.sl/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Merck.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE.md","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-03-29T21:03:50.000Z","updated_at":"2024-05-22T14:30:04.363Z","dependencies_parsed_at":"2024-04-15T19:26:45.154Z","dependency_job_id":"f8973075-5f10-4578-a22d-14e63e8fa139","html_url":"https://github.com/Merck/metalite.sl","commit_stats":null,"previous_names":["merck/metalite.sl"],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Merck%2Fmetalite.sl","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Merck%2Fmetalite.sl/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Merck%2Fmetalite.sl/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Merck%2Fmetalite.sl/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Merck","download_url":"https://codeload.github.com/Merck/metalite.sl/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":242951087,"owners_count":20211572,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-16T23:12:25.528Z","updated_at":"2025-03-11T00:56:23.576Z","avatar_url":"https://github.com/Merck.png","language":"R","readme":"# metalite.sl \u003cimg src=\"man/figures/logo.png\" align=\"right\" width=\"120\" /\u003e\n\n\u003c!-- badges: start --\u003e\n[![Codecov test coverage](https://codecov.io/gh/Merck/metalite.sl/branch/main/graph/badge.svg)](https://app.codecov.io/gh/Merck/metalite.sl?branch=main)\n[![R-CMD-check](https://github.com/Merck/metalite.sl/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/Merck/metalite.sl/actions/workflows/R-CMD-check.yaml)\n\u003c!-- badges: end --\u003e\n\n## Overview\n\nR package designed for the analysis \u0026 reporting of subject baseline characteristics in clinical trials.\nWe assume ADaM datasets are ready for analysis and\nleverage [metalite](https://merck.github.io/metalite/) data structure to define\ninputs and outputs.\n\n## Workflow\n\nThe general workflow is:\n\n1. Define metadata information using metalite.\n2. `prepare_sl_summary()` prepares datasets for summary of baseline characteristics.\n3. `format_base_char()` formats output layout.\n4. `rtf_base_char()` creates TLFs.\n\nHere is a quick example\n\n```r\nlibrary(\"metalite.sl\")\n\nmeta_sl_example() |\u003e\n  prepare_sl_summary(\n    population = \"apat\",\n    observation = \"apat\",\n    parameter = \"age;gender\"\n  ) |\u003e\n  format_base_char() |\u003e\n  rtf_base_char(\n    source = \"Source: [CDISCpilot: adam-adsl]\",\n    path_outdata = tempfile(fileext = \".Rdata\"),\n    path_outtable = tempfile(fileext = \".rtf\")\n  )\n```\n\n## Highlighted features\n\n- Avoid duplicated input by using metadata structure.\n  - For example, define analysis population once to use in all adverse events analysis.\n- Consistent input and output in standard functions.\n- Streamlines mock table generation.\n","funding_links":[],"categories":[],"sub_categories":[],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmerck%2Fmetalite.sl","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmerck%2Fmetalite.sl","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmerck%2Fmetalite.sl/lists"}