{"id":18696750,"url":"https://github.com/metgem/metgem","last_synced_at":"2025-04-12T07:31:36.795Z","repository":{"id":42198848,"uuid":"140303321","full_name":"metgem/metgem","owner":"metgem","description":"Calculation and visualization of molecular networks based on t-SNE algorithm","archived":false,"fork":false,"pushed_at":"2024-05-28T15:37:58.000Z","size":19434,"stargazers_count":28,"open_issues_count":3,"forks_count":3,"subscribers_count":5,"default_branch":"main","last_synced_at":"2024-05-29T00:05:34.997Z","etag":null,"topics":["chemistry","chemoinformatics","cosine-similarity","graph","mass-spectrometry","metabolomics","network","networking"],"latest_commit_sha":null,"homepage":"https://metgem.github.io","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/metgem.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2018-07-09T15:13:00.000Z","updated_at":"2024-05-30T16:05:54.688Z","dependencies_parsed_at":"2023-02-14T04:46:10.996Z","dependency_job_id":"0d39dc44-4310-440e-a3b0-9f6a59959198","html_url":"https://github.com/metgem/metgem","commit_stats":{"total_commits":1144,"total_committers":4,"mean_commits":286.0,"dds":"0.018356643356643332","last_synced_commit":"547fdf504f2bb1c0b43053e131500a33da6b9ab1"},"previous_names":[],"tags_count":28,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/metgem%2Fmetgem","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/metgem%2Fmetgem/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/metgem%2Fmetgem/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/metgem%2Fmetgem/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/metgem","download_url":"https://codeload.github.com/metgem/metgem/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":223503195,"owners_count":17156136,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["chemistry","chemoinformatics","cosine-similarity","graph","mass-spectrometry","metabolomics","network","networking"],"created_at":"2024-11-07T11:20:49.513Z","updated_at":"2025-04-12T07:31:36.788Z","avatar_url":"https://github.com/metgem.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"[![Codacy Badge](https://app.codacy.com/project/badge/Grade/6bb522a78e5a47688d166a4b8684c3cf)](https://app.codacy.com/gh/metgem/metgem/dashboard?utm_source=gh\u0026utm_medium=referral\u0026utm_content=\u0026utm_campaign=Badge_grade)\n\n# Download pre-built packages\n\nYou can download the latest stable version from [here](https://github.com/metgem/metgem/releases/latest) or latest development version from [here](https://github.com/metgem/metgem/releases/nightly).\n\n# Notes on installation on macOS\n\nLatest versions of MetGem are only compatible with macOS 10.15 Catalina and later.\nCurrently, MetGem lacks a signature for macOS. As a workaround, user can allow MetGem in the macOS Gatekeeper protection by running the following command in the terminal from the Applications folder.\n\n- Download MetGem and click the .dmg installer - Drag and drop MetGem into the Applications folder.\n- Open a Terminal and type the following command to tell macOS to trust the installed version of MetGem:\n  ```\n  sudo xattr -cr /Applications/MetGem/MetGem.app\n  ```\n- Approve command with user password.\n- Start MetGem.\n- If this fails, try the following command (the app will appear in the security preferences and you will be able to choose the \"Open anyway\" option):\n  ```\n  sudo xattr -d com.apple.quarantine /Applications/MetGem/MetGem.app\n  ```\n\n# Installation from source\n\n1. Install [Miniconda](https://docs.conda.io/en/latest/miniconda.html).\n\n2. Clone the repository:\n```\ngit clone https://github.com/metgem/metgem.git\ncd metgem\n```\n\n3. Create a new virtual environment\n```\nconda env create -f environment.yml\nconda env update -f environment.dev.yml\n```\n\n4. Activate the virtual environment\n```\nconda activate metgem\n```\n\n5. Install build dependencies:\n```\nconda install invoke\n```\n\n6. Build the resource file:\n```\ninvoke rc\n```\n\n7. Build the User Interface files:\n```\ninvoke uic\n```\n\n8. Launch MetGem\n```\npython -m metgem.gui\n```\n\nFor later use, you just need to activate the environment before launching MetGem\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmetgem%2Fmetgem","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmetgem%2Fmetgem","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmetgem%2Fmetgem/lists"}