{"id":18246139,"url":"https://github.com/mfcovington/provean-assembly-line","last_synced_at":"2025-04-04T14:31:12.120Z","repository":{"id":25897636,"uuid":"29338202","full_name":"mfcovington/PROVEAN-Assembly-Line","owner":"mfcovington","description":"Find amino acid substitutions from SNPs and run PROVEAN to estimate functional severity","archived":false,"fork":false,"pushed_at":"2016-09-09T23:44:45.000Z","size":47,"stargazers_count":5,"open_issues_count":0,"forks_count":4,"subscribers_count":1,"default_branch":"develop","last_synced_at":"2025-03-20T14:40:27.371Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Perl","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/mfcovington.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2015-01-16T07:46:38.000Z","updated_at":"2022-07-22T02:17:41.000Z","dependencies_parsed_at":"2022-08-24T06:00:57.007Z","dependency_job_id":null,"html_url":"https://github.com/mfcovington/PROVEAN-Assembly-Line","commit_stats":null,"previous_names":[],"tags_count":7,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mfcovington%2FPROVEAN-Assembly-Line","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mfcovington%2FPROVEAN-Assembly-Line/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mfcovington%2FPROVEAN-Assembly-Line/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mfcovington%2FPROVEAN-Assembly-Line/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/mfcovington","download_url":"https://codeload.github.com/mfcovington/PROVEAN-Assembly-Line/tar.gz/refs/heads/develop","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":247193962,"owners_count":20899401,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-05T09:24:42.053Z","updated_at":"2025-04-04T14:31:11.812Z","avatar_url":"https://github.com/mfcovington.png","language":"Perl","funding_links":[],"categories":[],"sub_categories":[],"readme":"### Find amino acid substitutions\n\nUse `find-aa-substitutions.pl` to identify amino acid substitutions.\n\nRequirements:\n\n- SNP files\n- GFF3 file\n- Genomic FASTA reference file\n\n### Run PROVEAN\n\nUse `run-provean.pl` to determine the putative functional severity of the amino acid changes.\n\nRequirements:\n\n- Amino acid substitution files\n- CDS FASTA reference file\n- PROVEAN installation\n\n### Filter PROVEAN results\n\nUse `filter-provean-results.pl` to filter PROVEAN results for a single gene, a file containing a list of genes, or all genes within a genomic range.\n\n*Version 0.4.0*\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmfcovington%2Fprovean-assembly-line","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmfcovington%2Fprovean-assembly-line","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmfcovington%2Fprovean-assembly-line/lists"}