{"id":18246156,"url":"https://github.com/mfcovington/rnaseq_workshop","last_synced_at":"2025-04-08T18:55:57.423Z","repository":{"id":4000264,"uuid":"5097724","full_name":"mfcovington/RNASeq_Workshop","owner":"mfcovington","description":null,"archived":false,"fork":false,"pushed_at":"2012-07-24T23:05:04.000Z","size":4780,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-02-14T15:14:55.673Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/mfcovington.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2012-07-18T15:06:35.000Z","updated_at":"2013-12-14T01:42:02.000Z","dependencies_parsed_at":"2022-09-02T16:10:59.147Z","dependency_job_id":null,"html_url":"https://github.com/mfcovington/RNASeq_Workshop","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mfcovington%2FRNASeq_Workshop","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mfcovington%2FRNASeq_Workshop/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mfcovington%2FRNASeq_Workshop/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mfcovington%2FRNASeq_Workshop/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/mfcovington","download_url":"https://codeload.github.com/mfcovington/RNASeq_Workshop/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":247909161,"owners_count":21016478,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-05T09:24:45.946Z","updated_at":"2025-04-08T18:55:57.394Z","avatar_url":"https://github.com/mfcovington.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"RNASeq_Workshop\n===============\n\n##R\n\nTo Install edgeR package:\n\n    source(\"http://bioconductor.org/biocLite.R\")\n    biocLite(\"edgeR\")\n\n\n##Galaxy Histories:\n\n[uploading files](https://main.g2.bx.psu.edu/u/mfcovington/h/uploading-files)\n\n[Mike's Grape Files](https://main.g2.bx.psu.edu/u/mfcovington/h/mikes-grape-files)\n\n[grape barcodes (final)](https://main.g2.bx.psu.edu/u/mfcovington/h/grapebarcodesfinal)\n\n[Grape: 10 million, barcode split (final)](https://main.g2.bx.psu.edu/u/amf1/h/7191210milsplit)\n\n[Grape - Full data set](https://main.g2.bx.psu.edu/u/mfcovington/h/grape-mfc)\n\n##Useful links:\n[Public Galaxy Server](https://main.g2.bx.psu.edu/)\n\n[FASTQ Quality Scores](http://en.wikipedia.org/wiki/FASTQ_format#Encoding)\n\n[Data File Formats](http://genome.ucsc.edu/FAQ/FAQformat.html)\n\n\n##Arabidopsis homologs\n\n    AT1G12610\n    AT1G16820\n    AT1G35140\n    AT1G63030\n    AT2G07050\n    AT2G36640\n    AT2G44610\n    AT2G47180\n    AT3G03341\n    AT3G11760\n    AT3G23730\n    AT3G50980\n    AT3G57770\n    AT4G11070\n    AT4G17500\n    AT4G25810\n    AT4G35160\n    AT5G33406\n    AT5G42380\n    AT5G44210\n    AT5G51990\n    AT5G61890\n    AT5G64260\n    ATCG00020   ","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmfcovington%2Frnaseq_workshop","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmfcovington%2Frnaseq_workshop","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmfcovington%2Frnaseq_workshop/lists"}