{"id":18047460,"url":"https://github.com/microbiome/miaDash","last_synced_at":"2025-03-27T17:30:43.470Z","repository":{"id":250013396,"uuid":"833233263","full_name":"microbiome/miaDash","owner":"microbiome","description":"Dashboard for microbiome data analysis with mia","archived":false,"fork":false,"pushed_at":"2025-03-27T09:23:07.000Z","size":1490,"stargazers_count":1,"open_issues_count":6,"forks_count":4,"subscribers_count":1,"default_branch":"devel","last_synced_at":"2025-03-27T09:29:59.785Z","etag":null,"topics":["bioinformatics","dashboard","gui","isee","mia","microbiome","shiny","visualisation","webapp"],"latest_commit_sha":null,"homepage":"https://miadash-microbiome.2.rahtiapp.fi/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/microbiome.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS","contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-07-24T16:05:16.000Z","updated_at":"2025-03-24T18:16:39.000Z","dependencies_parsed_at":"2024-08-25T07:31:26.826Z","dependency_job_id":"28133532-1a02-430e-9f02-8f31803c8147","html_url":"https://github.com/microbiome/miaDash","commit_stats":null,"previous_names":["riborings/sebuilder","riborings/iseebug","riborings/miadash","microbiome/miadash"],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/microbiome%2FmiaDash","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/microbiome%2FmiaDash/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/microbiome%2FmiaDash/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/microbiome%2FmiaDash/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/microbiome","download_url":"https://codeload.github.com/microbiome/miaDash/tar.gz/refs/heads/devel","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":245892455,"owners_count":20689503,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioinformatics","dashboard","gui","isee","mia","microbiome","shiny","visualisation","webapp"],"created_at":"2024-10-30T19:11:26.366Z","updated_at":"2025-03-27T17:30:43.457Z","avatar_url":"https://github.com/microbiome.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"# miaDash \u003cimg src=\"inst/assets/mia_logo.png\" align=\"right\" width=\"120\" /\u003e\n\n[![issues](https://img.shields.io/github/issues/microbiome/miaDash)](https://github.com/microbiome/miaDash/issues)\n[![pulls](https://img.shields.io/github/issues-pr/microbiome/miaDash)](https://github.com/microbiome/miaDash/pulls)\n[![R-CMD-check](https://github.com/microbiome/miaDash/workflows/build/badge.svg)](https://github.com/microbiome/miaDash/actions)\n[![codecov](https://codecov.io/gh/microbiome/miaDash/branch/devel/graph/badge.svg)](https://app.codecov.io/gh/microbiome/miaDash?branch=devel)\n[![codefactor](https://www.codefactor.io/repository/github/microbiome/miadash/badge)](https://www.codefactor.io/repository/github/microbiome/miadash)\n\nThe goal of miaDash is to provide a user-friendly interface to import,\nmanipulate, analyse and visualise TreeSummarizedExperiment objects.\n\n## Usage\n\nmiaDash is available online at [this address](https://miadash-microbiome.2.rahtiapp.fi/).\nWhile suitable for small and medium datasets, the online version may slow down\nwhen larger datasets are analysed (\u003e 1000 features). In this case, the app can\nbe installed and run locally. Either way, functionality to subset and\nagglomerate the data is also provided in the app.\n\n## Installation instructions\n\nThe release version can be installed from Bioconductor as follows:\n\n```\nif (!requireNamespace(\"BiocManager\", quietly = TRUE))\n    install.packages(\"BiocManager\")\n\nBiocManager::install(\"miaDash\")\n```\n\nContributors or users interested in the latest functionality can install the\ndevel version as follows:\n\n```\nremotes::install_github(\"microbiome/miaDash\")\n```\n\n## Example\n\nThe basic functionality of miaDash can be explored as follows:\n\n```\n# Import miaDash\nlibrary(miaDash)\n\n# Launch miaDash\nif (interactive()) {\n  miaDash()\n}\n```\n\n## Code of Conduct\n\nPlease note that the miaDash project is released with a\n[Contributor Code of Conduct](https://bioconductor.org/about/code-of-conduct/).\nBy contributing to this project, you agree to abide by its terms. Contributions\nare welcome in the form of feedback, issues and pull requests. You can find the\ncontributor guidelines of the miaverse\n[here](https://github.com/microbiome/mia/blob/devel/CONTRIBUTING.md).\n\n## Acknowledgements\n\nmiaDash results from the joint effort of the larger R/Bioconductor community. In\nparticular, this software mainly depends on the following packages:\n\n- [_mia_](https://bioconductor.org/packages/release/bioc/html/mia.html)\n- [_iSEEtree_](https://bioconductor.org/packages/devel/bioc/html/iSEEtree.html)\n- [_iSEE_](https://www.bioconductor.org/packages/release/bioc/html/iSEE.html)\n- [TreeSummarizedExperiment](https://www.bioconductor.org/packages/release/bioc/html/TreeSummarizedExperiment.html)\n- [_shiny_](https://cran.r-project.org/web/packages/shiny/)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmicrobiome%2FmiaDash","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmicrobiome%2FmiaDash","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmicrobiome%2FmiaDash/lists"}