{"id":28190287,"url":"https://github.com/microbiome/miatime","last_synced_at":"2025-05-16T10:12:32.979Z","repository":{"id":39618730,"uuid":"404288360","full_name":"microbiome/miaTime","owner":"microbiome","description":"Microbiome time series analysis","archived":false,"fork":false,"pushed_at":"2025-05-06T08:12:19.000Z","size":41759,"stargazers_count":6,"open_issues_count":16,"forks_count":6,"subscribers_count":5,"default_branch":"devel","last_synced_at":"2025-05-06T08:48:03.088Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://microbiome.github.io/miaTime/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"artistic-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/microbiome.png","metadata":{"files":{"readme":"README.Rmd","changelog":"NEWS","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2021-09-08T09:31:01.000Z","updated_at":"2025-04-11T06:22:00.000Z","dependencies_parsed_at":"2024-04-24T14:11:33.262Z","dependency_job_id":"59bf4c0f-5f03-4055-add5-8f399f4649e3","html_url":"https://github.com/microbiome/miaTime","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/microbiome%2FmiaTime","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/microbiome%2FmiaTime/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/microbiome%2FmiaTime/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/microbiome%2FmiaTime/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/microbiome","download_url":"https://codeload.github.com/microbiome/miaTime/tar.gz/refs/heads/devel","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":254509444,"owners_count":22082896,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-05-16T10:12:31.964Z","updated_at":"2025-05-16T10:12:32.970Z","avatar_url":"https://github.com/microbiome.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Microbiome time series manipulation with miaTime \u003cimg src=\"man/figures/mia_logo.png\" align=\"right\" width=\"120\" /\u003e\n\n\u003c!-- badges: start --\u003e\n\n[![R-CMD-check-bioc-devel](https://github.com/microbiome/miaTime/workflows/R-CMD-check-bioc-devel/badge.svg)](https://github.com/microbiome/miaTime/actions)\n\u003c!--[![R-CMD-check-bioc](https://github.com/microbiome/mia/actions/workflows/check-bioc.yml/badge.svg)](https://github.com/microbiome/mia/actions/workflows/check-bioc.yml)--\u003e\n[![Codecov test\ncoverage](https://codecov.io/gh/microbiome/miaTime/branch/master/graph/badge.svg)](https://codecov.io/gh/microbiome/miaTime?branch=master)\n\n\u003c!-- badges: end --\u003e\n\n# miaTime\n\nThis R package can be used to analyse time series data for microbial\ncommunities. The package is part of [miaverse](https://microbiome.github.io/), \nand is based on the `TreeSummarizedExperiment` data container.\n\nSee the [package homepage](https://microbiome.github.io/miaTime) for\nexample workflows.\n\n## Installation\n \nThe package can be directly installed from R command line.\n\n```{r, eval=FALSE, message=FALSE}\ndevtools::install_github(\"microbiome/miaTime\")\nlibrary(miaTime)\n```\n\n### Contributions and acknowledgments\n\nYou can find us online from [Gitter](https://gitter.im/microbiome/miaverse).\n\nContributions are very welcome through issues and pull requests at the\n[development site](https://github.com/microbiome/miaTime). We follow a git\nflow kind of approach. Development version should be done against the\n`main` branch and then merged to `release` for release.\n(https://guides.github.com/introduction/flow/)\n\n**Kindly cite this work**. For citation details, see R command\n```{r}\ncitation(\"miaTime\")  \n```\n\n# Code of conduct\n\nThe project is released with a [Contributor Code of Conduct](https://contributor-covenant.org/version/2/0/CODE_OF_CONDUCT.html). By contributing to this project, you agree to abide by its terms.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmicrobiome%2Fmiatime","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmicrobiome%2Fmiatime","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmicrobiome%2Fmiatime/lists"}