{"id":28190293,"url":"https://github.com/microbiome/miaviz","last_synced_at":"2025-08-22T19:16:32.927Z","repository":{"id":44457582,"uuid":"309655649","full_name":"microbiome/miaViz","owner":"microbiome","description":"Microbiome Analysis Plotting and Visualization","archived":false,"fork":false,"pushed_at":"2025-05-10T14:41:13.000Z","size":1568817,"stargazers_count":11,"open_issues_count":6,"forks_count":12,"subscribers_count":8,"default_branch":"devel","last_synced_at":"2025-05-10T15:26:33.104Z","etag":null,"topics":["bioconductor","microbiome","microbiome-analysis","plotting","visualization"],"latest_commit_sha":null,"homepage":"https://microbiome.github.io/miaViz","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"artistic-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/microbiome.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS","contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2020-11-03T10:50:30.000Z","updated_at":"2025-05-05T12:54:49.000Z","dependencies_parsed_at":"2023-10-05T09:50:56.667Z","dependency_job_id":"13cda931-fea1-4965-84b1-5827547233af","html_url":"https://github.com/microbiome/miaViz","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/microbiome%2FmiaViz","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/microbiome%2FmiaViz/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/microbiome%2FmiaViz/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/microbiome%2FmiaViz/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/microbiome","download_url":"https://codeload.github.com/microbiome/miaViz/tar.gz/refs/heads/devel","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":254509444,"owners_count":22082896,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioconductor","microbiome","microbiome-analysis","plotting","visualization"],"created_at":"2025-05-16T10:12:32.687Z","updated_at":"2025-05-16T10:12:33.350Z","avatar_url":"https://github.com/microbiome.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"# miaViz \u003cimg src=\"man/figures/mia_logo.png\" align=\"right\" width=\"120\" /\u003e\n\n\u003c!-- badges: start --\u003e\n[![Platforms](http://bioconductor.org/shields/availability/release/miaViz.svg)](https://bioconductor.org/packages/release/bioc/html/miaViz.html)\n[![rworkflows](https://github.com/microbiome/miaViz/actions/workflows/rworkflows.yml/badge.svg?branch=devel)](https://github.com/microbiome/miaViz/actions)\n[![Bioc-release](http://bioconductor.org/shields/build/release/bioc/miaViz.svg)](http://bioconductor.org/packages/release/bioc/html/miaViz.html)\n[![Bioc-age](http://bioconductor.org/shields/years-in-bioc/miaViz.svg)](https://bioconductor.org/packages/release/bioc/html/miaViz.html)\n[![Codecov test\ncoverage](https://codecov.io/gh/microbiome/miaViz/branch/devel/graph/badge.svg)](https://codecov.io/gh/microbiome/miaViz?branch=devel)\n[![Dependencies](http://bioconductor.org//shields/dependencies/release/miaViz.svg)](https://bioconductor.org/packages/release/bioc/html/miaViz.html)\n\u003c!-- badges: end --\u003e\n\n## Microbiome Analysis Plotting and Visualization\n\nThe scope of this package is the plotting and visualization of microbiome data.\nThe main classes for interfacing is the `TreeSummarizedExperiment` class.\n\n## Using the package\n\nOnline tutorials and examples are available at:\n\n- [Package homepage](https://microbiome.github.io/miaViz/) \n- [Orchestrating microbiome analysis with R/Bioconductor online book](https://microbiome.github.io/OMA)\n\n\n## Contribution\n\nFeel free to contribute by forking and opening a pull request. Please make sure\nthat required data wrangling should be designed as reusable as possible and\npotentially find a better home in the [`mia`](https://github.com/FelixErnst/mia)\npackage.\n\nAdditionally, please make sure that working examples are included and that \nvignetted make use of added functions in either `miaViz` or the\n[`TreeSummarizedExperiment`](https://github.com/fionarhuang/TreeSummarizedExperiment)\npackage.\n\n## Technical aspects\n\nLet's use a git flow kind of approach. Development version should be done \nagainst the `master` branch and then merged to `release` for release. \n(https://guides.github.com/introduction/flow/)\n\n## Installation\n\n### Bioc-release\n\n```\nif (!requireNamespace(\"BiocManager\", quietly = TRUE))\n    install.packages(\"BiocManager\")\n\nBiocManager::install(\"miaViz\")\n```\n\n### Bioc-devel\n\n```\nif (!requireNamespace(\"BiocManager\", quietly = TRUE))\n    install.packages(\"BiocManager\")\n\n# The following initializes usage of Bioc devel\nBiocManager::install(version='devel')\n\nBiocManager::install(\"miaViz\")\n```\n\n# Code of conduct\n\nPlease note that the miaViz project is released with a [Contributor Code of Conduct](https://contributor-covenant.org/version/2/0/CODE_OF_CONDUCT.html).\nBy contributing to this project, you agree to abide by its terms.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmicrobiome%2Fmiaviz","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmicrobiome%2Fmiaviz","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmicrobiome%2Fmiaviz/lists"}